K23043

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23043

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23043

Determination of introduced cDNA(s)

  • J013021E03 - Rice Full-length cDNAs - Original: J013021E03

    full reading [+] show sequence

    Nucleotide sequence: J013021E03 - full reading 
    GGCCCTACTC CTCACGCTCT TTCGATCTTC CTCCTCTCCT CTCTATTTCT 
    CTCATCAACA ATTACCGCAT CACAAGGAGC AAAAGCAGTT TCAGTTTCGG 
    CTCCATTGCT TATTAATTTA CCTCTACAGA AGAATGGGCA CAGAGATGGC 
    CACCGTGGAG GTGGAGGGCA TCCCATTTCC TCAGGAGATC ACCGTCAGTA 
    AGCCGTTATC ACTGCTAGCC CATGGCATTA CAGACATTGA GATTCATTTC 
    CTTCAGATCA AATACAACGC CATCGGGGTG TATCTTGAAA AGGACAATGT 
    ACTAGGGCAT TTGGAGAGTT GGAAGGGCGA GAAGGCAGAG GAGCTTGTGC 
    AGGATGATGG CTTCTTTCAG GCCCTAGTTT CTGCTCCTGT GGAGAAACTA 
    TTCAGGATCG TGGTGATCAA GGAGATCAAA GGATCACAGT ACGGCGTGCA 
    GCTGGAGAGC TCAGTGCGCG ACCGTCTCGT GTCAGTGGAC AAGTACGAGG 
    ATGAGGAGGA AGAGTCTCTG GAGAAGGTGA CTGAATTCTT TCAGTCCAAG 
    TATTTCAAGC CCAACTCCGT CCTCACCTTC CACTTTCCTA ACACCCCTGG 
    AATTGCAGAG ATATCATTTG TGACAGAAGG CAAGGGCGAG GCGAAGCTGA 
    CAGTGGAGAA CAAGAATGTG GCCGAGATGA TTCAGAAGTG GTACCTGGGT 
    GGAGAATCTG CAGTTTCTCC GACGACTGTG AAGAGCCTGG CAGATCAATT 
    CGCAGCACTG CTCTCTGCAT GAGGCATGGA GTAATAAACT ACTGTAGTAA 
    TGTTGCCTGT TTCCCATTCA TTTTTAACTC GATCATGCTT TGATTTGTCC 
    AGCTGCTCTC ATGTGCATGC TACAATTGAT AATGGTATTG GTTTCCCTAC 
    TACTTCAAAT GCATGATTTA CTTGCTCCAA AGCAGAGGAA ACATACTCAA 
    ATGTATATGT TTCAACTTTA CCTGTGTATC TGGTGCAAGC AACCTAAGAC 
    AGTGATAGAA GTGAAGGTAG GAATCTGTCC CTGTACTGCT CATGTGTTGG 
    AATTAAGTCC ACCAGTGGTT CCAACTTCCA ACTTGTGTAT TGGGCTTGCA 
    AAATGAAGCT GGAAAAAGAC ACCAGAATAT CTTTGAGAGC AACATCATGA 
    CACAAATTCA TGAATAGTAC TGTACTGCTA TAGTTTGGTG TGCAGTCTTC 
    AGTATTGTAC ATCCTTTAAA ACCTCCTTTC AGTGTTGTAC TCATTTTGGA 
    ATCAACCAAC CCATACAAGT TACCTACTCC

    Gene models with high sequence identity

    1. AT5G05270.2 [+] show detail - Chalcone-flavanone isomerase family protein
      E-value: 1e-64; Score: 244.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Chalcone isomerase 1.4e-51
    HMMPfam Chalcone isomerase, subgroup 3.3e-49
    Gene3D Chalcone isomerase, 3-layer sandwich 1.9e-41

    See the detailed result >

    AT5G05270.2

    Model type
    Protein coding
    Short Description
    Chalcone-flavanone isomerase family protein
    Computational Description
    Chalcone-flavanone isomerase family protein; FUNCTIONS IN: intramolecular lyase activity, chalcone isomerase activity; INVOLVED IN: response to karrikin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase, 3-layer sandwich (InterPro:IPR016088), Chalcone isomerase (InterPro:IPR016087); BEST Arabidopsis thaliana protein match is: Chalcone-flavanone isomerase family protein (TAIR:AT3G55120.1); Has 361 Blast hits to 360 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 358; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR