K23048

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23048

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23048

Determination of introduced cDNA(s)

  • J013155G18 - Rice Full-length cDNAs - Original: J013155G18

    full reading [+] show sequence

    Nucleotide sequence: J013155G18 - full reading 
    GATTTACACG CGCGGTGGTA TAATATCTTC GCCATCGCGT GCCGGTTGCA 
    TTGCACCTCG TGATTGACCG TGCTACGACG TACGTACCAT CATGGCTGCT 
    ACTATCCCCG CTTCTCCGGC CACTCTGCAG CCATGCAAGA AAAACGTGAG 
    CGGCAGCATG CTCATCCGGT CGCCTCCGCG CCCTTGGAGG AGGAGGCTCC 
    CCCAGCACGT TGTAATAGTT GATGCGAGCT CATCGTCTCG TGGCCCGAAG 
    GCAGCGACGG GTGGCCGGCT CGAGACGTCG ACTGACGCTG CAGCGGTGGC 
    CGGGGAGGAT GGAGACGTGA TCCGGAGGCT GCAGAACGGA CCGGACGTGC 
    GTGGCGTTGC GCTGGAAGGG GAGAACGGCC GGGCCGTGGA CCTCACGCCG 
    CTGGCGGTCG AGGTGATCGC CGAGAGCTTC GGGGAGTGGC TGCGGGAGGA 
    GCTCCAGCAG CTGGAGAGCG GGAGGGACGG CGGCGAGGTG CGGGTGTCCG 
    TCGGAAGGGA CCCCCGCCTG TCTGGCGCGC GGCTCGGCGC AGCACTGTTC 
    GCGGGGCTGG CGAGGGCAGG GTGTTCCGTG TTCGACGTGG GGCTCGCCAC 
    CACGCCGGCT TGCTTCATGA GCACCAAGCT CCCACGGTTC AGCTATGACG 
    CCTCCATCAT GATGACTGCA TCACATCTCC CATACACTCG CAACGGCCTC 
    AAGTTCTTCA TGAAGCGCGG TGGTCTCACG TCCGGCGAGG TGGAAGGGGT 
    CTGCGACCGT GCGGCGCGGA AGTACGTGGC CAGGAAGATG GGCCTTGGCG 
    GCGGGCGAGG CATGCCGCCG GTGGTGATGC GCGTCGACTT GATGAGCGCC 
    TATGCGCAGC ACCTCCGCAA CATAATCAAG GAGCGTGTTG CCCACCCGAC 
    ACACTACGAC ACCCCCCTAA AGGGCTTCAA GGTGATCGTG AATGCCGGCA 
    ACGGCTGCGG AGGGTTCTTC ACGTGGGACG TCCTGGAGAA GCTGGGAGCC 
    GACACGACGG GGAGCCTCCA CCTGGAGCCC GACGGCAAGT TCCCTCACCA 
    CATGCCCAAC CCGGGGGACA CGACCGCGAT GTCCCTCACG CGCGATGCGG 
    TCCTGGACCA CGGCGCGGAC CTCGGCGTGG TGTTCGACAC CGACGTGGAC 
    CGCAGCGGCG TGGTGGACGC CACGGGCGCG GCCATCAACG GCGATCGGCT 
    CATCGCGCTC ATGTCCGCCA TCGTGCTGGA CGAGCACCCC GGCACGACGG 
    TGGTCACGGA CGCGCGGACC AGCGACGGGC TCACCCGCTT CATCCAGGCC 
    AGGGGCGGCC ACCACTGCCT CTACCGCGTC GGCTACCGAA ACGTCATTGA 
    CAAGGGCGTG CAGCTCAACG CCGACGGCGT CGAGACGCAC CTCATGATGG 
    AGACCACCGG CCACGGCGCG CTCAAGGAGA ACAACTTTCT CGACGACGGT 
    GCGTACATGG TGGTGAAGAT TATTATCGAG ATGGTCAGGA TGAGACTCGT 
    GGGATTGGAG GGAAGCGTAG GAACACTCAT CATGGACCTT GAGGAGCCGG 
    CTGAGTCCAA GCTGATGAGG ATGAACATTC TGGGAGAAGC CAAGTATGCA 
    AAACAAAGGG GCACTCAAGC AGTCGAGACT TTTAGGAACC ATATCCAGGA 
    AGGGAAACTA AATGGTTGGG TTCTCGATGA CTGTGGGGAT TGCTCGGTTA 
    GCCAAGGATG CCTCGTGGAC ACGAATGATG ATCCTTTTGA TGTTGATGCG 
    TACATGTACA GGGCTAAATT TTTTGATGAG TACAAGGGAG AACTGGGGTG 
    GGTCCACATT CGCCAAAGTG TACATAACCC CAACATAGCA ATAAATATGC 
    AGTCTTCTAT CCCTGGTGGA TGCAAATCCA CGGCAAAGGA TCTTCTTGAC 
    AGGTATCTAC TGACGAGTGG AGTCAATGAG TTTGTTGACA TCACCGAAGT 
    ACAAAAGTTT GTAAAGTAGA TATTATATTA TAATCATTAG CTTTCTACAC 
    TTTGTATGTA TAACTTTTAC ATCCCTACTG GAAGATCGAA CAAGAGCTTT 
    GCTCTTTCTG TAGAGTATGT AGAGACTATA ATATTTTGAT ATCCTTTCAA 
    TAGAAACCTG CATTAGTTT

    Gene models with high sequence identity

    1. AT1G70820.1 [+] show detail - phosphoglucomutase, putative / glucose phosphomutase, putative
      E-value: 0; Score: 718.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PHOSPHOGLUCOMUTASE 1.2e-207
    HMMPanther PHOSPHOHEXOMUTASE FAMILY MEMBER 1.2e-207
    Gene3D Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 3.3e-23
    Gene3D Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 7.5e-19
    Gene3D Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 5.4e-19
    superfamily Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 1.1e-27
    superfamily Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 1.5e-27
    superfamily Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 4.3e-16
    FPrintScan Alpha-D-phosphohexomutase, N-terminal 1.6e-14
    FPrintScan Alpha-D-phosphohexomutase, N-terminal 1.6e-14
    FPrintScan Alpha-D-phosphohexomutase, N-terminal 1.6e-14
    FPrintScan Alpha-D-phosphohexomutase, N-terminal 1.6e-14
    HMMPfam Alpha-D-phosphohexomutase, alpha/beta/alpha domain I 3.6e-29
    HMMPfam Alpha-D-phosphohexomutase, alpha/beta/alpha domain II 5.8e-20
    HMMPfam Alpha-D-phosphohexomutase, alpha/beta/alpha domain III 4e-10

    See the detailed result >

    AT1G70820.1

    Model type
    Protein coding
    Short Description
    phosphoglucomutase, putative / glucose phosphomutase, putative
    Computational Description
    phosphoglucomutase, putative / glucose phosphomutase, putative; FUNCTIONS IN: intramolecular transferase activity, phosphotransferases; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-D-phosphohexomutase, alpha/beta/alpha domain III (InterPro:IPR005846), Alpha-D-phosphohexomutase, alpha/beta/alpha domain II (InterPro:IPR005845), Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III (InterPro:IPR016055), Alpha-D-phosphohexomutase (InterPro:IPR005841), Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (InterPro:IPR005844); BEST Arabidopsis thaliana protein match is: phosphoglucosamine mutase family protein (TAIR:AT5G17530.2); Has 16953 Blast hits to 16952 proteins in 2734 species: Archae - 435; Bacteria - 11347; Metazoa - 78; Fungi - 46; Plants - 64; Viruses - 0; Other Eukaryotes - 4983 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR