K23125

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23125

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23125

Determination of introduced cDNA(s)

  • J013111L16 - Rice Full-length cDNAs - Original: J013111L16

    full reading [+] show sequence

    Nucleotide sequence: J013111L16 - full reading 
    GGGACGACCA ACTCCGCGGT GGCGGCGATG GAGGGCGGGA AGCCGACGGT 
    CATCACCAAC GCCGAGGACC AGCGGACGAC GCCCTCCGTG GTGGCGTACA 
    CCAAGGGCGG GGAGCGGCTG GTCGGGCAGA TCGCCAAGCG GCAGGCCGTC 
    GTCAACCCGG AGAACACCTT CTTCTCCGTC AAGCGCTTCA TCGGCCGCAA 
    GATGGCCGAG GTCGACGACG AGGCCAAGCA GGTCTCCTAC CACGTCGTCC 
    GCGACGACAA CGGCAACGTC AAGCTCGACT GCCCCGCCAT CGGCAAGCAG 
    TTCGCCGCCG AGGAGATTTC CGCGCAGGTC TTGAGGAAGT TGGTGGACGA 
    TGCATCTAAG TTTTTGAATG ACAAAATTAC CAAAGCAGTG GTTACTGTTC 
    CTGCATACTT CAATGACTCA CAGAGGACAG CAACAAAAGA TGCTGGACGT 
    ATTGCAGGAT TGGAAGTTCT CCGCATTATA AATGAGCCGA CTGCTGCATC 
    CCTTGCTTAT GGTTTTGAGA AGAAAAACAA CGAAACGATT CTTGTGTTTG 
    ACTTGGGAGG CGGTACCTTT GATGTCTCTG TATTGGAGGT TGGAGATGGT 
    GTGTTTGAGG TGCTTTCCAC ATCTGGTGAC ACACACCTTG GTGGCGATGA 
    CTTCGATAAG AAAGTTGTGG ATTGGCTTGC TAGCAACTTT AAGAAAGATG 
    AAGGCATTGA TCTTCTGAAA GACAAACAAG CCCTGCAGCG ACTCACTGAG 
    GCAGCAGAGA AAGCGAAGAT GGAACTGTCT ACGCTGTCTC AGACAAACAT 
    TAGCTTGCCT TTCATAACTG CTACTGCTGA TGGGCCTAAA CACATCGAGA 
    CAACTCTCTC CAGAGCCAAA TTTGAGGAGC TATGTTCGGA CCTCATTGAT 
    AGGCTTAAAA CTCCTGTCAC TAATGCCTTG AGAGATGCCA AACTGTCTGT 
    TGATAACCTG GACGAAGTGA TTCTTGTTGG TGGATCCACT CGTATCCCTT 
    CCGTGCAAGA GCTTGTGAAG AAGATCACTG GCAAGGATCC CAATGTCACA 
    GTCAACCCTG ATGAGGTTGT TTCTCTTGGG GCAGCTGTAC AGGGTGGAGT 
    TTTGGCCGGA GATGTGAAAG ATGTCGTTCT TCTTGATGTT ACTCCATTGT 
    CTCTTGGTCT GGAGACGTTG GGTGGAGTGA TGACCAAGAT TATTCCCAGA 
    AACACAACAC TGCCCACCTC AAAATCAGAG GTATTCTCCA CAGCTGCAGA 
    TGGACAGACA AGTGTTGAGA TAAATGTTCT TCAGGGAGAG AGAGAGTTTG 
    TCCGGGACAA CAAGTCTCTT GGAAGCTTCC GCTTGGATGG AATCCCTCCT 
    GCACCACGTG GTGTTCCACA AATTGAAGTC AAGTTTGATA TTGATGCCAA 
    TGGTATTCTC TCTGTTGCTG CTATTGATAA GGGTACTGGG AAGAAACAGG 
    ATATCACCAT CACCGGCGCT AGTACACTGC CAAAGGATGA GGTTGAGAGA 
    ATGGTGGAAG AGGCTGACAA GTTTGCTCAG GAGGACAAAG AGAAAAGAGA 
    TGCCATTGAT ACCAAAAACC AGGCAGACTC TGTGGTCTAC CAGACTGAGA 
    AGCAACTGAA GGAGCTAGGT GACAAGGTAC CTGCACCTGT GAAAGAGAAG 
    GTGGATGCAA AGCTCAACGA GCTCAAAGAG GCCATTGCGG GTGGATCAAC 
    ACAGAGCATG AAGGATGCCA TGGCTGCTTT AAACGAGGAA GTTATGCAGA 
    TCGGCCAGGC CATGTACAAC CAGCAGCCTA ATGCTGGTGC TGCTGGACCT 
    ACTCCTGGTG CCGATGCTGG ACCGACAAGC TCAGGCGGTA AGGGACCGAA 
    TGATGGAGAT GTTATTGATG CGGATTTCAC TGACAGCAAT TGATAGTTCT 
    AGCGATTGAA GATTATTGAT GGAAGGATGA TCTGTGGTGG ATGGCTGTGA 
    GGGTCTGATG GGTGATGGTA TAGGAAGAAG GGAGTGAACA AATTGTTCTT 
    TTTGTTTACT ATGGATCCCA TGTTCAATAG GCTCTTTAGT TTGCAATTTG 
    ATAGCGTAGG GTTTTGCCAA CATTTTCCTG TGATGTTGAA TGAAGGATTA 
    TAAAAAGTAG CCTTCAAAAA AAGAGGAGGC AAAGGTTTTG ATCGAAGAAG 
    TAGCTGATTG ATATGACCTT GTTCCTTGAA AATAAAAATA TCATTAGTTC 
    C

    Gene models with high sequence identity

    1. AT5G49910.1 [+] show detail - chloroplast heat shock protein 70-2
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther HEAT SHOCK PROTEIN 70 (HSP70) 1.9e-298
    HMMPanther Heat shock protein Hsp70 1.9e-298
    Coil coiled-coil 0
    PatternScan Heat shock protein 70, conserved site 0
    PatternScan Heat shock protein 70, conserved site 0
    HMMTigr Chaperone DnaK 0
    Gene3D no description 1.5e-41
    Gene3D no description 1.4e-26
    Gene3D no description 4.2e-76
    HAMAP Chaperone DnaK 35.114
    FPrintScan Heat shock protein Hsp70 2.6e-69
    FPrintScan Heat shock protein Hsp70 2.6e-69
    FPrintScan Heat shock protein Hsp70 2.6e-69
    FPrintScan Heat shock protein Hsp70 2.6e-69
    FPrintScan Heat shock protein Hsp70 2.6e-69
    FPrintScan Heat shock protein Hsp70 2.6e-69
    FPrintScan Heat shock protein Hsp70 2.6e-69
    FPrintScan Heat shock protein Hsp70 2.6e-69
    HMMPfam Heat shock protein 70 3.1e-258
    HMMPfam Glutamate dehydrogenase, NAD-specific 1e-24
    HMMPfam Glutamate dehydrogenase, NAD-specific 3.5e-24
    HMMPfam Glutamate dehydrogenase, NAD-specific 2.2e-34
    HMMPfam Glutamate dehydrogenase, NAD-specific 2e-29
    superfamily Actin-like ATPase domain 1.6e-65
    superfamily Heat shock protein 70kD (HSP70), peptide-bind 9.4e-64
    superfamily Actin-like ATPase domain 2.7e-52
    superfamily Heat shock protein 70kD (HSP70), C-terminal s 0.00000022

    See the detailed result >

    AT5G49910.1

    Model type
    Protein coding
    Short Description
    chloroplast heat shock protein 70-2
    Curator Summary
    Stromal heat shock protein involved in protein import into chloroplast.
    Computational Description
    chloroplast heat shock protein 70-2 (CPHSC70-2EAT SHOCK PROTEIN 70-2); FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, response to cadmium ion, protein targeting to chloroplast, response to heat; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Chaperone DnaK (InterPro:IPR012725), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: chloroplast heat shock protein 70-1 (TAIR:AT4G24280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J033107P11 - Rice Full-length cDNAs - Original: J033107P11

    full reading [+] show sequence

    Nucleotide sequence: J033107P11 - full reading 
    GACGGATCCG CACGCTCTCC ACCGCTGCCG CCCACCACCC GTTCGACGGA 
    ATTCCCCACC CGTCGCTCGC CCGCCACCGC CGCGTCAACC CCATCGCCTT 
    CTCGGCCGCC GTCAGGGCGT CCGACCCGGC CTCCCTCCCG GCGCTCCACG 
    CCGTCGCCGT AACCACCGGC CTCCACGGCT TCGCCGCCGT GACCAACTCC 
    CTCGCCGCCC GCTACGCCAA GACCGGGTCG TTCCCTTCCG CCGTCGGGGT 
    GTTCGCCGCG GCGCGGGCGA GGGATGTCAG CTCCTACAAC ACCATCCTCT 
    CCGCGTTCCC TGACCCGGCC GAGGCGCTCG ACTTCGCGTC GTGGATGCTC 
    CGCTCCGGCG CCGTGCGGCC CGACGCCGTC ACGTGCACCG TCGCGCTATC 
    GCTGGCCGCC GGCCGGGGGG AGGGCTTCCT CGTGCGGCAG CTGCACGCGC 
    TGGCTTGGCG GTCCGGGCTC GCGGCTGATG TGTTCGTCGG CAACGCGCTC 
    GTCACTGCGT ACTCACGTGG AGGGTCTCTC GGGGAGGCCA GGAGTGTGTT 
    CGACGATATG CCGGCGAGGG ACCTCGTCTC ATGGAACGCG TTGATCTGCG 
    GGCTCGCGCA AGACGGCGAC TGCCCGGCCG AGGTGATTGG CGTGTTCCTC 
    CGGATGCTCA GGGACGGCGA CGTCCAGCCT GACCGGATAT CGGTCTGCAG 
    CGTGATCCCG GCATGTGGCG GCGAGGGGAA GCTCGAGCTC GGCCGGCAAG 
    TCCATGGCTT TGCGGTGAAG CTGGGCGTCG AGGGATACGT CTCCATCGGC 
    AACGTGCTCG TCGCGATGTA CTACAAGTGC GGCGCTCCCG GCAGCGCCCG 
    GAGGCTGTTC GACGCCATGA GCGAGCGCGA CGTCGTGTCA TGGACCACGG 
    CCATCTCCAT GGACGGCGAG GACGCCCTCA CGCTGTTCAA TGGCATGCGG 
    CGAGACGGCG TGCCGCCGAA CGAGGTCACC TTCGTGGCGC TGATGTCGGC 
    GCTGCCAGCG GACTGTCCGG CGAGGGGAGC GCAGATGGTC CACGCGGCGT 
    GCCTCAAGGC CGCCGTGTCC GGCGAAGCGG CGGCGTCGAA CAGCCTCATC 
    ACCATGTATG CCAAGGCGCG TCGCATGGAC GACGCGAGGA TGGTGTTCGA 
    CCTCATGCCT CGCCGGGAGA TCATCGCGTG GAACGCTGTG ATCTCGGGCT 
    ACGCGCAGAA CGGCCGGTGC AACGACGCCC TCGAGCTCTT CTCGTCCATG 
    GCCAGGTGCC TGACACCCAA CGAGACCACG TTCGCGAGCG TCCTCAGCGC 
    GGTGACCGCG GTGGAGACGG TGTCCATGGC GTACGGCCAG ATGTACCACT 
    CCAGGGCTCT CAGCATGGGC TTCGGCGACA GCGAGTACGT CGCCGGCGCC 
    CTCATCGACA TGTACGCGAA GCGTGGCAAC TTGGAAGAGT CCCGGAAGGC 
    GTTCCACGAG ACGGAGCAGC GGAGCCTCAT CGCCTGGACG GCGATCATCT 
    CGGCGAACGC CAGGCACGGG AGCTACGGCG CCGTCATGAG CCTCTTCGGC 
    GACATGGCGC GCTCCGGCGT CGCACCGGAC GGCGTCGTGC TCCTCGCCGT 
    CCTCACGGCC TGCCGGTACG GCGGGATGGT CGACGCCGGC AGGGACATCT 
    TCGACTCGAT GGCTGCCGAT CGCGGCGTCG AGCTGTGGCC GGAGCACTAC 
    TCCTGCGTCG TCGACATGTT AGGCCGGGCA GGGAGGCTGG CGGAGGCTGA 
    GGAGCTCATG ATGCGGATGC CGGCGGGGCC GAGCGTGTCG GCGCTGCAGA 
    GCTTGCTCGG AGCCTGCAGA ATCCATGGCG ACGCGGAGAT CGGCGAGAGG 
    GTCGCCAGAA TTTTGACGGA GAAGGAGCCG ACGGAGTCCG GCGCGTACGT 
    CCTCCTGTCG AACATCTACG CCGACGTGGG CGACTGGGAC GGCGTCGCCA 
    AGGTGAGGAG GAAGATGAGG GACAGAGGCG TCAAGAAGGA GATCGGGTTC 
    AGCTGGGTGG ACGCCGGCGC TGGCGAGGCA CTGCATTTGC ACAAGTTTTC 
    GTCGGACGAC ACGACGCATC CGCGTACAGA AGAGATATAC GCAGTGGCCG 
    ATGTGTTAGG CTGGGAGATG AAATTTCTGA AGAATTGTTC GCAAATGGAA 
    ATGATCTTGA TCTGATACAT CAGTATAAAA TTAATCGAAA CTG

    Gene models with high sequence identity

    1. AT4G32430.1 [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
      E-value: 5e-165; Score: 578.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily TPR-like 1.3e-26
    superfamily TPR-like 0.00000015
    HMMPanther SELENIUM-BINDING PROTEIN 1.2e-203
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1.2e-203
    ProfileScan Pentatricopeptide repeat 5.338
    ProfileScan Pentatricopeptide repeat 9.547
    ProfileScan Pentatricopeptide repeat 5.831
    ProfileScan Pentatricopeptide repeat 7.213
    ProfileScan Pentatricopeptide repeat 6.073
    ProfileScan Pentatricopeptide repeat 9.69
    ProfileScan Pentatricopeptide repeat 8.309
    ProfileScan Pentatricopeptide repeat 9.843
    ProfileScan Pentatricopeptide repeat 7.245
    ProfileScan Pentatricopeptide repeat 7.048
    ProfileScan Pentatricopeptide repeat 5.656
    ProfileScan Pentatricopeptide repeat 8.024
    HMMPfam Pentatricopeptide repeat 0.0058
    HMMPfam Pentatricopeptide repeat 0.12
    HMMPfam Pentatricopeptide repeat 0.7
    HMMPfam Pentatricopeptide repeat 0.00019
    HMMPfam Pentatricopeptide repeat 0.00000053
    HMMPfam Pentatricopeptide repeat 0.1
    HMMPfam Pentatricopeptide repeat 0.00082
    HMMPfam Pentatricopeptide repeat 0.023
    HMMTigr Pentatricopeptide repeat 1.1
    HMMTigr Pentatricopeptide repeat 0.0049
    HMMTigr Pentatricopeptide repeat 0.6
    HMMTigr Pentatricopeptide repeat 1.2
    HMMTigr Pentatricopeptide repeat 0.00011
    HMMTigr Pentatricopeptide repeat 0.0004
    HMMTigr Pentatricopeptide repeat 0.5
    HMMTigr Pentatricopeptide repeat 0.14
    HMMTigr Pentatricopeptide repeat 1.3

    See the detailed result >

    AT4G32430.1

    Model type
    Protein coding
    Short Description
    Pentatricopeptide repeat (PPR) superfamily protein
    Computational Description
    Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27610.1); Has 44749 Blast hits to 13591 proteins in 248 species: Archae - 1; Bacteria - 28; Metazoa - 59; Fungi - 99; Plants - 43967; Viruses - 0; Other Eukaryotes - 595 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR