K23126

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23126

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23126

Determination of introduced cDNA(s)

  • J033063O04 - Rice Full-length cDNAs - Original: J033063O04

    full reading [+] show sequence

    Nucleotide sequence: J033063O04 - full reading 
    GTGATTTCAG TTTCAAAGGA ACTTTGGATT GGTTCACTGG GAAATAGTGC 
    TGCAGAGTCA CTAGTTAGAT CGAAATTTGA GGAGTTTGGC CCCTTAGCAA 
    ACTTCTTATT TTATCCCCCA AAGAATTTTG CCTTGGTTGA GTACGGGAAC 
    ATAATGCATG CTGTTCATGC ATATGGATGT ATGCAGGGTT CCTCTGTTTG 
    GGGTGGTGGT CTCCAAATAA GGTATTTAGA TAGACTTATA GGCAGCAAGG 
    GATTTGCTAG TGGTATAGCT GTTGGTGAAA GTCGTCATAT TTATGTTGCT 
    AAAGTTAAGA ACAAAAAAGA TAAAGATGAG GTGTTTGATG AATTAAAGGC 
    CGCAGGGTTG AAGAGGCCAT GTAGCTTTAC AGATATTTCC AGTGAAAATG 
    CTTTGCTTCT TGAATTTGAG ACAGCAACTG ATGCAGCTGC TGCGAAAGCC 
    CATATTAGGC GCCAGCTTCA TCCAGATGTC TGTTCCCAGG ACAAGAATAC 
    TTCTGGTCAT GAACTTTTTG TGCGGAACAT AGACAATTCA GTCCCTGACA 
    TGGAGTTTAT CAATGCATTT TCACGATTTG GTGAGGTCAT AAGGTGGCAG 
    TTCAATAAGC TTGATGGGAA CTGCTTGATA GATTATAGAT CACCTAATGC 
    TGCTGCCACT GCAAAATCTC ACCTGCATGG TGCAAGATTT GGGCTGAAGT 
    CAATTAGTGT TGAATCGAGA TCTGTGCATG ATAAAACTTT GTCGCCTTCT 
    GTTCCAATGC TAGCCCCGAG TGTTTCTGAC AGCAGTCACC ATGAGATCAG 
    GAATCCAAGG GTTTCAGGGT ATAATGCAGG CTTCACAGTA CCAACAGAGC 
    GACCAATTTA TGGTCCATCG GCTCCCAGAG CTCCACAAGG CATCCTTCCA 
    TGCCCACCTG TTTCTGCACA CCGTGGTCCT GTAATACCAC CGCCACCTAT 
    TCAAACTTCT TTTGTCCGTC CTGTATATCC TGGTCCAGGA AGTCCGTGGG 
    AAAATACTAC CCCAAATCCA TCCTTCAGTC ACGCTTCTCC TCGAATGATG 
    CCTGGAAGTA GCTTCCGTAT GAATCCACCT GCTCCTCTTC CTTTTATACC 
    ATCTTCTGTT ACCCCTCTTA CACAGTTTCC TGGAGGTTCA GCACAGCAGT 
    CTGAGAAAAG GCCACCTCCA CCTCCACCTC CACCAAATGT AGCCCCCCCA 
    CCATTTACTC GTCAAGATAT ACCACCCCCA CCACCATCTC CACCACCACT 
    ACCTATTACT CAGCCACCTT CTGTGCCACC ACCCCCAAAT TCCCCTCCTC 
    CGCTTCAACC TGCTACTGAC CCTTCTGACT CACAAAAGCA ACGTTCTCAT 
    CCTCGATGGC AGGGCTCTCT TTCAAAAAGT GGTTTACATT ACTGTTCAAT 
    CTATGCAAGT AGAATAGAGT TGGATGCTTG TAGATATGAA CATGCAGTTT 
    CTGAACCGAC AGGGTGGCCT TCAAGATTAG ATGTGACAAA GCGAACGGAT 
    TACCAACATG TGAAGACAAC TTTCTCCAAT ACTCCACCTA GCAAAAGAGA 
    GGTCTGTCGG CTATTACCCT GTTCGAATGG TGATCAGAAA GGGTTCCGGG 
    ATTTTATATC CTATCTGAAA CAGAGAGAAT GCGCCGGTGT GATCAAGATT 
    CCATCTGTCA AGCCATTGTG GTCAAGGCTA CTATTTATCC TTCCTCCCAC 
    GCCTGAGGCC TGTGGGATGC TAGAACTTCC GCCCCATCCG ACCGAATGCC 
    TAATTGCACT GATTTTGCCA AAGGAGACGA CTGCTGAAGC GACCTAACAT 
    GATTGTCGCG TAGACACATT CCGTAACCTC GTTGCTTCCA GTTTCGTGCA 
    CAGTAAACAA TTTTGCATGA ATGATACTAA GTTCCTACAG CTGCTTATGA 
    ATAATATGCT TCCAGTTTCG TGCACAGTTA ACAAATTTTC ATGTTTTCTT 
    TTGACGAGAC ACCAATACTG TACTTATTCC TTTTGCTGCA TAACTGATAT 
    ATAGTTGCTA CAATATC

    Gene models with high sequence identity

    1. AT1G27750.1 [+] show detail - nucleic acid binding
      E-value: 2e-49; Score: 194.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan RNA recognition motif, RNP-1 9.61
    ProfileScan RNA recognition motif, RNP-1 10.207
    superfamily RNA-binding domain, RBD 6.4e-11
    superfamily RNA-binding domain, RBD 6.2e-10
    HMMSmart RNA recognition motif, RNP-1 0.002
    HMMSmart RNA recognition motif, RNP-1 5.1e-07
    Gene3D Nucleotide-binding, alpha-beta plait 9.6e-06
    Gene3D Nucleotide-binding, alpha-beta plait 6.4e-07
    HMMPanther RNA-BINDING PROTEIN 7.4e-07
    FPrintScan PRICHEXTENSN 9.1e-09
    FPrintScan PRICHEXTENSN 9.1e-09
    FPrintScan PRICHEXTENSN 9.1e-09
    FPrintScan PRICHEXTENSN 9.1e-09
    FPrintScan PRICHEXTENSN 9.1e-09
    FPrintScan PRICHEXTENSN 9.1e-09
    HMMPfam Spen paralogue and orthologue SPOC, C-terminal 2.5e-15
    HMMPfam RNA recognition motif, RNP-1 0.00015
    HMMPfam RNA recognition motif, RNP-1 3.5e-05

    See the detailed result >

    AT1G27750.1

    Model type
    Protein coding
    Short Description
    nucleic acid binding
    Computational Description
    nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue SPOC, C-terminal (InterPro:IPR012921), RNA recognition motif, RNP-1 (InterPro:IPR000504); Has 48205 Blast hits to 29216 proteins in 1385 species: Archae - 84; Bacteria - 5862; Metazoa - 21406; Fungi - 6566; Plants - 7294; Viruses - 1352; Other Eukaryotes - 5641 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR