K23135

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23135

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23135

Determination of introduced cDNA(s)

  • J023044M23 - Rice Full-length cDNAs - Original: J023044M23

    full reading [+] show sequence

    Nucleotide sequence: J023044M23 - full reading 
    GGACGAGACT TCACGCCGGC CGCCCTGCTC GTCGTCGCCG GCGGCATCTG 
    CGGCGCGCGC GCGTCATCCT CATCCCCAGC TAAGTGGCCT CACCGTCACC 
    GAGCGCCCGC GTCGGATCGC GTGCGGGAGA GAGCGGGGGG CGGAGAGATC 
    TGGTGCGAGG TCGAGTCGGG GCGCCGGCGA TGGCGGACGA CGCGGGCGGC 
    GGCAGGCGCG AGTACAGCAT CATCGTGCCC ACCTACAACG AGCGCCTCAA 
    CGTCGCCCTC ATCGTCTACC TCATCTTCAA GCACCTGCCG GATGTCAACT 
    TTGAAATCAT AGTTGTGGAT GATGGAAGCC CTGATGGAAC TCAAGACATT 
    GTAAAGCAGT TGCAGCAAAT ATATGGTGAA AACCGTGTTC TGCTGCGAGC 
    TAGACCGAGG AAGCTAGGAC TTGGTACTGC ATATTTACAT GGACTAAAGC 
    ATGCCTCTGG GGACTTCGTT GTTATCATGG ATGCTGACCT ATCTCACCAT 
    CCGAAGTACT TGCCAAGCTT CATTAGGAAG CAAAAGGAAA CTGGTGCTGA 
    TGTTGTAACT GGCACCCGTT ATGTTCAGAA CGGTCGTGTC CATGGTTGGA 
    ATCTCATGCG CAAGTTGACT AGCAGGGGAG CAAATGTTCT AGCACAAACA 
    TTACTACAGC CTGGAGCTTC TGATTTGACT GGATCATTCA GGCTATATAA 
    ACGGAATGTC CTAGAAGATT TAATCTCCTC GTGTGTCAGC AAGGGATATG 
    TTTTCCAAAT GGAAATGATT GTTAGGGCTA CCAGGAAAGG TTATCACATT 
    GAAGAGGTTC CAATAACTTT TGTCGATAGG GTTTTTGGAA CTTCAAAACT 
    TGGTGGATCT GAGATAGTTG AGTATCTGAA AGGCCTTGTT TATCTGCTGC 
    TCACTACATA GGGAAAAAAC CGCTAGGCGC TTAACTGTAT CAGACACAAC 
    TCGTGATAGA GGAACTTCAA TTTGTTATAT CTACAGTTTT GAGTTGCGTG 
    AATTACTGAT TTTCTGACTT GCCAGTGGGT TCTCGTACAG TGTATTTGGT 
    GTGTAAGTAC ACTTTCATGA GCAAGGGCAA GAACACAATT GTACCATCTA 
    TATATGAACT GCAGAGAAAG CTTTGGGT

    Gene models with high sequence identity

    1. AT1G20575.1 [+] show detail - Nucleotide-diphospho-sugar transferases superfamily protein
      E-value: 1e-117; Score: 419.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycosyl transferase, family 2 2.7e-36
    Gene3D no description 3.2e-26
    HMMPanther GLYCOSYLTRANSFERASE RELATED 3.1e-71
    superfamily Nucleotide-diphospho-sugar transferases 4.1e-42

    See the detailed result >

    AT1G20575.1

    Model type
    Protein coding
    Short Description
    Nucleotide-diphospho-sugar transferases superfamily protein
    Computational Description
    Nucleotide-diphospho-sugar transferases superfamily protein; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT2G39630.1); Has 22705 Blast hits to 22656 proteins in 2589 species: Archae - 933; Bacteria - 16103; Metazoa - 288; Fungi - 260; Plants - 98; Viruses - 23; Other Eukaryotes - 5000 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR