K23136

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23136

Determination of introduced cDNA(s)

J023105K03 - Rice Full-length cDNAs - Original: J023105K03

full reading [+] show sequence

GAGAGGAGGA TTCCATCGGG TTTCCCTTTC TTCTTGCTCG CCCACGCGCG 
TGGCGCCGCC GCCGCAGAGC TCGATTCAGA CCATGGCGTC GCCGTCCATC 
CCGGCGGCTC TCCGCCACCC GCATGCCCAC GCCGCCGGCC TCCGCCTCCT 
CCGCTCCTCG GGAGACCCCT GCCCGCCCTG CACCCTTCCG TTTAGGTTAT 
GTGGAGTGCC ATTAAAAAAG GGCCATGTGT ACGCTGGTGC TGTATCTGCT 
ACCAGGAGTC CTGGCTTGGG CAATGCAGAG AATCTGCGTG AGAGTCCAAG 
CTTGTCAAGG AGCTGGGGTA TGAATGGGCA GATTGGCGAT GATCATGATA 
TTCTTATAGA ATGTAGGGAT GTGCACAAAT CCTTCGGTAA CAAGAAGGTA 
TTGAATGGCA TTAGCTTCAA GATTAGACAC GGAGAAGCCG TTGGAATAAT 
TGGTCCTTCG GGAACAGGAA AGTCAACTGT TTTGAAGGTT ATGGCTGGGC 
TACTGGCTCC AGACAAGGGC GATGTTATTA TTTGCGGAAG AAAAAGACAT 
GGGCTAGTTA GTGATGAAGA CATATCTGGT GTCCGAATTG GCTTGGTGTT 
TCAAAGTGCA GCTTTGTTTG ATTCTCTCAC GGTTCGTGAA AATGTTGGAT 
TCCTTTTATA TGAAAATTCC AGCCTGCCTG AGGAGAGAAT AGCTACACTA 
GTGACAGAAA CATTGGCCGC AGTAGGCCTA AAAGGCGTTG AAGATCGAAT 
GCCATCTGAA TTGTCTGGTG GCATGAAAAA GCGTGTAGCT CTAGCTCGTT 
CAATAATATA CGATGATACA AAGGAAACAA TAGAGCCAGA GGTTATTTTG 
TACGATGAGC CTACTGCTGG ACTTGACCCT ATTGCATCCA CCGTTGTTGA 
AGACCTTATA CGTTCCGTAC ATGTAACAGG GAAAGATGCT CTTGGTAAGC 
CTGGAAAGAT AGCATCTTAT GTGGTTGTCA CTCATCAGCA TAGCACAATA 
AAACGAGCCG TTGACAGGTT GTTATTTCTC CATGAGGGGA AGGTAGTGTG 
GGAAGGAATG ACACAAGAAT TTACTACATC AACAAATCCT ATTGTAAAAC 
AGTTTGCATC TGGTAGCTTG GATGGACCGA TACGGTACTT CTGAGAATTA 
TAATCCAAGT TTTCTTAATG CTCCCTGCCC TACCAACCTG CACATTCTGC 
CATATCTACA GAAGGCATCC CAGAACAAGA GGACGACATG TGACTTGTAT 
CTGGTTACCT TAGGCAGGTC TGGAGGTACA CAGCAAAGTT TCTGCCTTGG 
CATTATTAAG CAACCAATAG TTGCGTTAGC ACACAGGAAT ATAACCCTTG 
AGATTTGTTG GACCTTGTTA AGTGAAATAA ACAGGAAGAA GAGCTTGTAA 
AATGGAACAG TTTGTTGGTT GAGTTGTGTA AATGTAACCT TGATTGTAGC 
AGCTGCTTGG GTGTTGGTGT CATAGATGAG AGATTCTATA TTCAATTATT 
GATAAAGGCT CTACAATTTT GCGAGCCAAA ATCGATTGGT TGT

Gene models with high sequence identity

AT1G65410.1 [+] show detail - non-intrinsic ABC protein 11
E-value: 3e-125; Score: 446.00

InterPro Scan Digest

Program	Description	E-value
superfamily	P-loop containing nucleoside triphosphate hyd	1.6e-59
HMMPfam	ABC transporter-like	1.2e-18
HMMPfam	Protein of unknown function DUF1602	8.2e-10
PatternScan	ABC transporter, conserved site	0
ProfileScan	ABC transporter-like	23.73
HMMPanther	ABC TRANSPORTER	8.8e-116
HMMPanther	ATP BINDING CASSETE (ABC) TRANSPORTER	8.8e-116
Gene3D	no description	3.6e-55
HMMSmart	ATPase, AAA+ type, core	1.3e-10

See the detailed result >

AT1G65410.1

Model type: Protein coding
Short Description: non-intrinsic ABC protein 11
Curator Summary: Encodes a member of NAP subfamily of transporters. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.
Computational Description: non-intrinsic ABC protein 11 (NAP11); FUNCTIONS IN: transporter activity, ATPase activity; INVOLVED IN: lipid transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: non-intrinsic ABC protein 3 (TAIR:AT1G67940.1); Has 424474 Blast hits to 380294 proteins in 4085 species: Archae - 7338; Bacteria - 330543; Metazoa - 9238; Fungi - 6335; Plants - 5254; Viruses - 18; Other Eukaryotes - 65748 (source: NCBI BLink).
Link: InterPro Scan - TAIR