K23138

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23138

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23138

Determination of introduced cDNA(s)

  • J023062O11 - Rice Full-length cDNAs - Original: J023062O11

    full reading [+] show sequence

    Nucleotide sequence: J023062O11 - full reading 
    GAGTTCTCTC TTCTTCCCCC CCTCATCTCC GCCGCCTCGC CGCGAACGGG 
    ACGCCGGCCA AGAGCTCGAA GCTGATGAGA GATAGCGACG GCGAAGGGGC 
    CGGCGGCGGC CTCCCGCGCT CGCACCCGTC GAACCTGCCG CTGCCGGCGC 
    CGCACTCCGA CCCAAACCTC CAGTTCTCCG GGACGGACGA TGACTTCTCC 
    AACCGTCACA GCAGCTCGTC GGCGACGGGC GGCGCGAGCC CCGGGTACTA 
    CTCCGACTAC CCGTCCAGCT TCAGCGGCGA GTGCTCGCCG TACAACATGT 
    CGCCCTGGAA CCAGACCATG GCGTCGCCGT GGTCGCACCA CAGCGACGCG 
    TCCATGGCCG GGCTCGGCGG CGCGCCCGCC ATGGCGCCCG GGACCAGCCT 
    CATCGGCTCG CTGGTGAGGG AGGAAGGGCA CATCTACTCG CTCGCCGCCA 
    AGACCGACAC CCTGTACACC GGCTCCGACA GCAAGAACAT CCGCGTGTGG 
    CGCAAGCAGA AGGATTCCGG CGGGTTCAAG TCGTCGAGCG GCCTCGTCAA 
    GGCCATCGTC ATCTCCGGCG AGCGCATCTT CACCGGGCAC CAGGACGGCA 
    AGATCAGGGT GTGGAAGGTG TCGCCCAAGA ACGGCCTGCA CAAGCGCGTC 
    GGCAGCCTGC CCCGGCTGCG CGACTTCCTC CGCGGCTCGC TCAACCCGTC 
    CAACTACGTC GAGGTCCGCA AGAACCGGAC GGCGCTCTGG ATCCGCCACA 
    GCGACGCCGT GTCGTGCCTG AGCCCGACGG ACTCGGCGCA GGGCCTGCTC 
    TACTCCGGCT CGTGGGACCG GACCTTCAAG GTGTGGCGGA TCAACGACTC 
    CAAGTGCCTC GAGTCCGTGG TGGCGCACGA CGACAACGTG AACGCCATCG 
    TGGCAGCGTT CGACGGGCTG GTGTTCACCG GGTCGGCGGA CGGGACGGTG 
    AAGGTGTGGA AGAGGGAGCT GCAGGGGAAA GGGACCAAGC ACGTCGCGGT 
    GCAGACGCTG CTGAAGCAGG AGCACGCGGT GAACGCGCTC GCCGTGAGCG 
    CCGTCGCGCC GGTGCTCTAC TGCGGCTCCT CCGACGGGCT CGTCAACTTC 
    TGGGAAGGGG AGCGCCACCT GGTCCACGGC GGCGTGCTGC GCGGGCACAA 
    GAAGGCCGTG TTCTGCCTCG CCGCCGCGGG CTCCCTCCTC CTCAGCGGCT 
    CCGCCGACAA CACCATCTAC GTGTGGCGGC GCGACGGCGG CGTCCACTCC 
    TGCCTCTCCG TGCTCACCGG CCACACCGAG CCGATCAGGT GCCTCGCCAT 
    CGTCGAGGAC AACAAGGACA ACGCCGCCGT GCCCGTCGAC GCCGTGGACA 
    GCAGCTTCGC GTCGGGCTCG TCCACGCGGT GGATTGTGTA CAGCGGCAGC 
    CTCGACAAGT CGATCAAGGT GTGGCGCGTC GCCGAGGACG CGCCTGACGC 
    GCTGCTCCGT GGCCCCGGTG GCGGCGACGC GCCGCAGATG TTCGACCGGT 
    ACCCCGGCGA CCCATTCGGC GCCAGCAGCT CGTCGTTCCG CTAGAACACG 
    CGCCCGATCA ACCAATGCAC CATTTTGATC AGTTCCAAGA AGAAATTTTC 
    ACCTTACAAT TGGGCAGATC AACGTCATGA ACCTCTCTGA TGGCTAACGG 
    TTTGAGCGAA TTGAAGGAAA TTGCTGGGTT TTGTTTGTTA CACGTCCTAT 
    ATATACTGTG ATGAAGACAA GTATGAAATG AATAGCATCA ACATCATTTC 
    TGGCCATGAA CATCTGAAGC TGCAACGGCA AGTGGTAGAA ATGAAGAGCG 
    TATATAGGTA AGTTTGCTTT CAGAAAGTGG CCGGGGGGAA TTTTTGATAC 
    ATGCTCATAT ATCTGATGTG TACTAGTTGA AGCCGCGACT TGGTATTCAT 
    CTTAAGGATC GATTGAAATC AAGATTAATT GGGAACCAAT AAAAGGGGAT 
    AATTTCAAAC TGTTTTTATA GGTTGACGTT AGAGGATTGT TAATTACCCT 
    CTTTGAAGAT TAGCACCAAA AAAGTTCATC GGGTGCTTAT TCATATGTAG 
    TATTCCCAGT TTATTGTGAT GTTCAATGCA AAACTTATGC TCAGTTATGT 
    TTCGATTTGG TTTATCCTTT TTATACATAC TTCACACTTC TACTTGTAAC 
    TTCATGATGG AGAATGCATG ATTCCCC

    Gene models with high sequence identity

    1. AT2G26490.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
      E-value: 1e-127; Score: 454.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan WD40 repeat 2 9.64
    ProfileScan WD40 repeat 2 10.074
    ProfileScan WD40 repeat 2 11.11
    ProfileScan WD40-repeat-containing domain 23.967
    HMMSmart WD40 repeat 2.8
    HMMSmart WD40 repeat 3.5
    HMMSmart WD40 repeat 0.026
    HMMSmart WD40 repeat 9.5e-06
    HMMSmart WD40 repeat 0.11
    HMMSmart WD40 repeat 0.00063
    HMMSmart WD40 repeat 2.7e-05
    FPrintScan G-protein beta WD-40 repeat, region 2.1e-05
    FPrintScan G-protein beta WD-40 repeat, region 2.1e-05
    FPrintScan G-protein beta WD-40 repeat, region 2.1e-05
    superfamily WD40 repeat-like-containing domain 1.8e-46
    HMMPanther F-BOX AND WD40 DOMAIN PROTEIN 2.8e-26
    HMMPfam WD40 repeat, subgroup 0.74
    HMMPfam WD40 repeat, subgroup 0.057
    HMMPfam WD40 repeat, subgroup 0.00011
    HMMPfam WD40 repeat, subgroup 1.2e-06
    HMMPfam WD40 repeat, subgroup 0.014
    HMMPfam WD40 repeat, subgroup 2.1e-07
    HMMPfam WD40 repeat, subgroup 1.9e-08
    Gene3D WD40/YVTN repeat-like-containing domain 4.4e-40

    See the detailed result >

    AT2G26490.1

    Model type
    Protein coding
    Short Description
    Transducin/WD40 repeat-like superfamily protein
    Computational Description
    Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G34380.1); Has 38085 Blast hits to 18995 proteins in 635 species: Archae - 34; Bacteria - 5266; Metazoa - 14476; Fungi - 8827; Plants - 4594; Viruses - 0; Other Eukaryotes - 4888 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR