K23142

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23142

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23142

Determination of introduced cDNA(s)

  • J033050O16 - Rice Full-length cDNAs - Original: J033050O16

    full reading [+] show sequence

    Nucleotide sequence: J033050O16 - full reading 
    GGGGGAGAAA ACGGGTAGAG AGAAAAGAGG AGGAGGAGCC CCAATCCGGG 
    ACGCCATTGA CGCCCTCCCA GGAAGGTCAG AGTAGAGGGA GGCGAGGAAC 
    ACATGACCTC CTCCTCTCCT CTCTTCGTGG AAGAGTAGTA GTGGTAGTTG 
    GTGTTGCGTA GAAGAGAGCA CGGAAGCGAT ACGCGGCGGG GAAGAGAGCA 
    GAGCAGCCGG GTGGCCCGTT CTTGCCGCCG CGGCGCCGTC GTCGCTGCCT 
    TTCTCGCCTC GGGAGATCGC GGATTAGAGG AGGAGTTGGG GGAAGAGGAG 
    GGTTTGGGGG CAATGGATAC TACCACGAGG GCCAAGATCC CGTCCCTTCA 
    CCACCAGACG GAGATCAACT GGGACAACCT CGACAAGACC AAGCTCTATG 
    TGGTGGGAGC CGGGATGTTC AGTGGCGTGA CCGTGGCGCT GTACCCGGTA 
    TCGGTGATAA AGACCCGGAT GCAGGTAGCC ACTGGGGAAG CCGTGAGGAG 
    GAATGCCGCG GCAACATTCA GGAACATTCT CAAGGTGGAC GGAGTGCCCG 
    GGCTGTACCG AGGGTTTGGG ACAGTTATCA CAGGGGCCAT CCCTGCTAGG 
    ATTATCTTTC TTACAGCGCT TGAGACAACA AAGGCGGCCT CGCTTAAGCT 
    TGTTGAACCA TTTAAGCTGT CGGAGCCGGT ACAAGCAGCC TTTGCCAATG 
    GCCTTGGCGG TTTGTCGGCA TCTCTATGTT CGCAGGCTGT GTTTGTGCCC 
    ATTGATGTGG TTAGCCAGAA ATTGATGGTT CAAGGATATT CTGGTCATGT 
    TAGATATAAG GGTGGACTTG ATGTTGCCCA ACAGATTATA AAGGCTGATG 
    GAATTCGGGG GCTGTACAGA GGATTTGGCC TGTCTGTTAT GACGTACTCA 
    CCATCTAGTG CTGTGTGGTG GGCAAGCTAT GGGTCCAGCC AGCGCATAAT 
    TTGGAGTGCT TTTGATCGTT GGAATGATAA AGAAAGTTCT CCTAGTCAGT 
    TGACAATAGT TGGTGTCCAA GCCACAGGGG GGATTATTGC TGGTGCAGTG 
    ACATCCTGTG TTACAACTCC CATAGATACT ATCAAAACCA GACTGCAGGT 
    TAATCAAAAC AAACCAAAAG CCATGGAAGT AGTTAGAAGA TTGATTGCTG 
    AAGATGGATG GAAAGGTTTC TACAGAGGTT TAGGTCCAAG ATTTTTCAGC 
    TCATCAGCTT GGGGTACCTC AATGATAGTA TGCTATGAAT ACCTAAAGCG 
    CTTGTGTGCT AAAGTTGAAG AGGTCTGAGT CAGCTTAAAC CTATCACTCT 
    GATGCTCGCA GTGGTGGAAA TTTTGTAGCA AAAATCCAAT AATGCTGTAT 
    GCCAACAACT GTGACCCATG AGGAAGCTCT CTTTCTTGCT GACTTGATAC 
    TAGATATCTT TAAAATTTTA GTGCTCTTGA GGCTATTTTG AAAATGCAGA 
    GGTTCATATT GTTTGCCTCT AACGATGAAT ATGGATTAGG CAGAATGTTT 
    TACATGATAT ATAAACGAAA GATTAGATAT GTTCACTTTT CATTCTTTTT 
    AGCTCCAGCC TCCAGGGCTT GTAATAGTGA GACCGGAGTA TTGGAACCGG 
    TTTCAGTGAG GAGGAGCAAG GATATATATA CATTTGCTCG TTTCTCTTCG 
    ATGTACTCAA AATATCATTC TTCGAATTTT TTTACGATGG TGCTGGTCTT 
    CGTTTTGTAC C

    Gene models with high sequence identity

    1. AT5G15640.1 [+] show detail - Mitochondrial substrate carrier family protein
      E-value: 4e-125; Score: 445.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Mitochondrial substrate carrier 9.4e-66
    ProfileScan Mitochondrial substrate/solute carrier 16.227
    ProfileScan Mitochondrial substrate/solute carrier 20.968
    ProfileScan Mitochondrial substrate/solute carrier 20.711
    HMMPanther MITOCHONDRIAL CARRIER PROTEIN-RELATED 1.8e-150
    HMMPanther Mitochondrial substrate carrier 1.8e-150
    HMMPfam Mitochondrial substrate/solute carrier 0.000000000000023
    HMMPfam Mitochondrial substrate/solute carrier 1.9e-17
    HMMPfam Mitochondrial substrate/solute carrier 1.4e-20
    FPrintScan Mitochondrial carrier protein 0.000011
    FPrintScan Mitochondrial carrier protein 0.000011
    FPrintScan Mitochondrial carrier protein 0.000011
    FPrintScan Mitochondrial carrier protein 0.000011

    See the detailed result >

    AT5G15640.1

    Model type
    Protein coding
    Short Description
    Mitochondrial substrate carrier family protein
    Computational Description
    Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrion, mitochondrial inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT1G72820.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR