K23143

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low saturation (PATO:0000328) (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23143

Determination of introduced cDNA(s)

J013040N11 - Rice Full-length cDNAs - Original: J013040N11

full reading [+] show sequence

GGGCCGCTTC CCTAGGCTTG GCGTAAAAGA AAATCTCCCC GTCTCGTCGT 
CTCCTCCGCT CCTTGCGCCA TCTCGCGGCT GAACAGGGGA GGGGCGGCGA 
TCTCCATCCG GCGAGCGGAG CAGGGGAGGG GAGGGGATCT TGACAATGGT 
TGGACCTGGG CATAGGAACA GTCACGGGAA GCGTCACTCT GATTATGCTG 
AAAATGGAGG TGGCAAGAGA AGGAATCCTG GTGATGATAC ATATGCTCCT 
GGTCCAGATG ATACTGTCTA CCGCTATCTT TGCCCTTCTA GAAAAATAGG 
GAGCATCATT GGGAGGGGTG GAGAAATTGC TAAGCAGATG AGGGCCGACA 
CTCAAGCTAA GATAAGGATT GGTGAGAGTG TATCTGGTTG TGATGAGAGA 
GTTATCACAA TATTTAGCTC AAGCAGGGAA ACTAATACCC TAGTAGATGC 
TGAAGATAAG GTTTGCCCTG CCCAAGACGC TCTCTTTAGA GTTCATGAAA 
AGCTATCCAT AGATGATGAT ATTGGGAATG AAGAAAGTGA TGAAGGTTTA 
GCTCAAGTTA CCGTTCGGTT GCTTGTGCCA TCAGACCAGA TTGGATGCAT 
TATTGGAAAA GGTGGGCATA TTATACAGGG AATCCGCAGT GACACTGGTG 
CTCATATACG TGTTCTTAGC AATGAAAATC TCCCTGCGTG TGCCATCAGT 
GGTGATGAAC TTCTTCAGAT ATCTGGGGAC TCAACAGTTG TCAGAAAAGC 
TCTTCTTCAA GTGTCATCTC GTCTCCATGA CAACCCATCT AGGTCACAGC 
ATCTTCTTGC ATCCAGCATG ACACAGCCTT ATCCAGTGGG CTCCCACCTT 
GGTAGTTCCT CAACTGCACC AGTTGTGGGG ATTACGCCTT TAATTAGTTC 
TTATGGAGGA TACAAAGGTG ATGTGGCTGG AGATTGGCCT TCTATATATC 
AACCACGGAG GGAGGAGAGC TCTGCAAAGG AATTTAGCTT GCGCCTTCTT 
TGTGCTGCAT CAAATGTGGG AGGTGTAATT GGAAAGGGTG GTGGAATTAT 
CAAACAGATT AGGCAGGAGT CTGGAGCCTT TATCAAAGTT GATAGTTCAA 
ATACTGAAGA TGACTGCATA ATTACTGTTT CTGCAAAGGA GTTCTTTGAA 
GATCCTGTCT CCCCAACAAT AAATGCTGCA GTTCATTTAC AACCAAGATG 
CAGTGAGAAA ACTGATCCGG AATCAGCGAT CCCGTCTTAC ACAACACGCT 
TGTTGGTGTC GACATCACGT ATTGGGTGCT TGATTGGAAA AGGTGGTTCA 
ATCATTACTG AGATAAGGAG AACATCAAGA GCAAACATAC GTATCCTTTC 
TAAGGAGAAT GTACCAAAAG TAGCAGCAGA AGACGAAGAG ATGGTTCAGA 
TCAGTGGAGA CCTTGATGTT GTAAGACATG CTCTTCTGCA AATAACTACT 
AGGCTGAAAG CCAATTTCTT TGAAAGAGAA GGTGCTTTAT CAGGTTTCCC 
ACCTGTAATC CCTTACCATC CTCTTCCAGT TGGTGTTTCT GAAGGGCCAA 
AGTATCTAGG CAGAGATACT AAGCCTCTTG GGCATGATTA TCCATATTCA 
AGTGGATATC GTGGCTCAGA TGATATTGGC CCTATTGACA GCTATGCAAG 
TTATGGCAGC TCCCAGGTCT CTGGAGGAGG TTATGGGGCT TATGGTGGAT 
ATAGTGGTCG TTCTGGCAGC AGTGGGTTAT CTGGCCCTAG TTCATTTTCC 
TATGGAAAGC GACATGGTTA TTAGGACTTA GATTGACAAA TGCAACAGGT 
ATGGTTCATC CACCTTGTCT TGAAATGAAC AGAATGATCA TGCGATCAAG 
ACTTGCTCCT TATTGCATTT CTGCCTTTTA AACACATTTA ACCCAGCTCA 
GCTATCTTCT GATGGACCTG TTCTTTTCAC CTTTGCCCCA TGCCCACCTC 
CCTTACTAAA AACAGCCAAG ACAAAAGAAT GCCAAGACCA ATGAAGTATG 
GAGCCTGCTT ATTGGAGCCC CTTCCCAAAC CAGATGACCA AGAGTATGGC 
CCCAACCTGG AAGCTTTGCC TAAGAGGGAC CTGCCTGGAT GCCATAGACC 
ATCTTATTTC CCTAGTATAC AGCATTTACT TATATTTTCC TCTGGGACTA 
TGTTGATTCC CCGTCTTACA TGTTCTAAAC CTATGTATTG AAAGTTCACA 
GTTGAGACTT CCTGTATGTG TTCTCGTGCA ACCTGCTTCA TCTTAGTAGT 
TCGTGTGGAA GAACTTGGTT CCCTGTTTGC CAACCAAAAG CCTAGAAGTT 
ACTTGCCCTT GCTTTAAGGA TGTGGATCGT GTCATCCTTC ACATTCGTTC 
CTATCTGCAC ATAGTTCCCC AGAGAAAATT GTACCTCCTC AGTGAGCTCA 
AAATAGGCTA ACATAAAACT TAAGTTTACC TATAAACCAA TCTCAGCATG 
GTCTTCTAGT ATCAACCTGT CTGGTAAGCT ATATGACTAC TATGGCGATT 
TACAGTTAGC TGGAAGTTTT CGCTTTTGCT GATTTATAGA TCATAAAAGC 
CCTAACATGC AATTGTGCAA GCCATGCTAT ACATGGGATC TTGACTTGAT 
GTGCACGTGT GCTCTGATGC TCAATCTGAG TGTGGGTAAG TTTCAGAGAA 
CCTCTCAAAG TTAATAACTG GGTTGAGATT TTATCGAGTT AAGAGTTTCC 
TTTGTGTTTT AGAGTCTTTT CCTCTTCTTT ACCCTTCTCA TGGAGGTGCA 
GGAGCATACG CCGTGTGCTG CTACTGCAGA CTTGTCCACT GCTATATGGA 
ACCACTGCTG GAGTTGCAGA ACGTTGGTGC CATGCCATGC AGGGCATTTG 
TTAGTGTATT GCTGTAGACT ATGATACATT TTCGATGTAG GCGGTAACAT 
GGCAAACAGT ATTGTGCTGC TTTCAGTATA TTTCTTTTTT TTGGCCAAAT 
TTGTTTATGC ATGTAAAAGC AATTCTCTCA ACATTGTATT TGAACAGTTT 
GGTCGAATTA GCCGATCATT CTTATGTACT GATTGATGTC CACTGTTGTT 
GGTGATGGAC TACTGAGCAC TTTGTAGTAC GTGATTTTCA TAGACCGGTG 
CTGTTGTGAT TTTCCTAGAC AAATGTAGTG TTGTGGCAAT TGTATTTAAA 
TG

Gene models with high sequence identity

AT5G15270.2 [+] show detail - RNA-binding KH domain-containing protein
E-value: 3e-133; Score: 473.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	RNA-BINDING PROTEIN RELATED	9.5e-154
HMMPanther	RNA-BINDING PROTEIN RELATED	9.5e-154
HMMSmart	K Homology	0.00000081
HMMSmart	K Homology	0.000000000068
HMMSmart	K Homology	0.00048
HMMSmart	K Homology	0.00000000051
superfamily	Eukaryotic type KH-domain (KH-domain type I)	0.0000000000000033
superfamily	Eukaryotic type KH-domain (KH-domain type I)	0.000000000000026
superfamily	Eukaryotic type KH-domain (KH-domain type I)	0.0000000000006
superfamily	Eukaryotic type KH-domain (KH-domain type I)	0.00000000078
Gene3D	no description	0.0000003
Gene3D	no description	0.00000000000022
Gene3D	no description	0.0000037
Gene3D	no description	0.00000000000076
ProfileScan	K Homology, type 1	17.212
ProfileScan	K Homology, type 1	12.852
ProfileScan	K Homology, type 1	12.831
ProfileScan	K Homology, type 1	15.85
HMMPfam	K Homology, type 1, subgroup	0.00000000017
HMMPfam	K Homology, type 1, subgroup	0.000000000000042
HMMPfam	K Homology, type 1, subgroup	0.00000000041
HMMPfam	K Homology, type 1, subgroup	0.0000000000002

See the detailed result >

AT5G15270.2

Model type: Protein coding
Short Description: RNA-binding KH domain-containing protein
Computational Description: RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT1G14170.3); Has 5625 Blast hits to 2559 proteins in 215 species: Archae - 0; Bacteria - 48; Metazoa - 3662; Fungi - 737; Plants - 967; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink).
Link: InterPro Scan - TAIR