K23204

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23204

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23204

Determination of introduced cDNA(s)

  • J013089B12 - Rice Full-length cDNAs - Original: J013089B12

    full reading [+] show sequence

    Nucleotide sequence: J013089B12 - full reading 
    GTCGGCCTAT CCGTTCCAGG CTTCCAGCTT CCTCACGGAG AACTCCTCGG 
    ATAGGCGATG GCGGCCGCGG TCACCGCGCC ACCGTACGCG GCGGGGGCGC 
    CGCGCCGCCG GCTTCTCGCC GCTCGTCCGC GCCTACCTCC TCAAGGCCGT 
    CAAGAACAAC AACGGCACCG GCGTGCTCCT CCTCTCCGAC GTCTTCGGCT 
    TCGAGGACTC CGCCACCCGG GACTTCGCCT ACCGCGTCGC GTGCCACGGC 
    TACAAGTAAA TCACGCCGCG CCGCCTCTCT CTCTCTCTCG CTTCTTTCAA 
    CTCTCGTTGC TCGATCGTTG CACGCAGTGT TCTTGTGCCG GACTTGTTCC 
    GGGGGAGCCC GTGGAAGAAG GCGGAGAAGG ACGGCTTCGA CGCGTGGCTC 
    GCCGGGCACG CGCCGGAGCG GGCGTCGGGC GACATCGACG CGTGCACGAA 
    CTGGCTGGTG GACGAGTTCA CGGCGGCGGG GGTGTCGAGG AAGCTCGGGA 
    TAATCGGGTT CTGCTACGGG GGCGGCCGGC TGGTGGAGAC GCTGGCGCGC 
    GACGGCGGCG GCGGCGGCGG CGCCTACAGC GCGGGGGTCT GCTTCTACGG 
    GTCCAGGATG GACGCGTCGC TGGCGCCGCG GCTCGCCGCG CCCGTGCTGT 
    TCGTGTGCGG CGACGGCGAC CCGCTGTGCG GGGTGGAGAC GGTGCGGGCG 
    CTGGAGGCAC GCGCGAGGGG CGCCAGGGCC GCCGTGTACG CCGGCAGGGG 
    GCACGGGTTC GCGCACCGGC CGCAGTCGCT GGAGGACGAC GGCGACGCCG 
    AGGACGCGTT CGCGCTGATG CGGGGGTGGC TGCACGACCA CCTTCTCGCC 
    TGATCATCCT TGTTCCGTTT CAAACTGTTC GCTCGTAGAC ATTGGACAGG 
    GTTCTATTTA TACTATTGAC TATGTTACTG CTTGTGTAAA TGTGTAATGC 
    ACATGGGCAT TGCATTGCAC TTGAGAAATG AGTAGTTGAG TATTGTAAGT 
    TCAATAGTTT CGTTTCATGT TTTGGAGTCG GAGCTTTCAA TGTGTCACTC 
    TGGCTGTGAC ATATTTCTCT CCAAAAATAA CACGAAACCT TTTTAGTTGT 
    CC

    Gene models with high sequence identity

    1. AT1G35420.2 [+] show detail - alpha/beta-Hydrolases superfamily protein
      E-value: 4e-60; Score: 228.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ENDO-1,3-1,4-BETA-D-GLUCANASE 2.3e-11
    HMMPanther DIENELACTONE HYDROLASE 2.3e-11
    HMMPanther ENDO-1,3-1,4-BETA-D-GLUCANASE 6.6e-29
    HMMPanther DIENELACTONE HYDROLASE 6.6e-29
    Gene3D no description 6.8e-16
    HMMPfam Dienelactone hydrolase 1.1e-15
    superfamily alpha/beta-Hydrolases 1.4e-19

    See the detailed result >

    AT1G35420.2

    Model type
    Protein coding
    Short Description
    alpha/beta-Hydrolases superfamily protein
    Computational Description
    alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dienelactone hydrolase (InterPro:IPR002925); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G23600.1).
    Link
    InterPro Scan - TAIR