K23219

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23219

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23219

Determination of introduced cDNA(s)

  • J023019H16 - Rice Full-length cDNAs - Original: J023019H16

    full reading [+] show sequence

    Nucleotide sequence: J023019H16 - full reading 
    GATCTCTCCA CTCACAAACA AAGCACAAGA GTAAGATGGA TGTTCCTTCT 
    GTTGTGATCC CCATTTTGGT TGTGCTGGTC TCGAGACTCC TGACAAGCGC 
    CCTGGTGCAC CTGTTGTGGA AGCCCTACGC CATCACCAAG CTGTTCCGTG 
    GGCAGGGCAT CACAGGCCCC AAATACAGGC TCTTCGTCGG GTCCCTCCCG 
    GAGATCAAGC GCATGAAGGC CGCCGCTGCC GCCGACGAGG TCGCCGCCGG 
    CGCCCACTCC CACGACTTCA TCCCCATCGT GCTGCCCCAG CACAGCAAAT 
    GGGCCACAGA TCACGGGAAG ACGTTTCTTT ACTGGCTTGG CGCTGTGCCG 
    GCCGTCAGCC TCGGCAGGGT GGAGCAGGTG AAGCAGGTGC TGTTGGAGAG 
    GACGGGGTCC TTCACGAAGA ACTACATGAA CGCGAACCTG GAGGCGCTGC 
    TGGGCAAGGG CCTCATCCTG GCCAACGGCG AGGATTGGGA GCGCCATCGC 
    AAGGTTGTGC ACCCAGCGTT CAACCACGAC AAGCTCAAGT TCATGTCTGT 
    GGTCATGGCG GAAAGCGTGG AGTCGATGGT CCAGCGCTGG CAATCACAGA 
    TACAGCAAGC TGGAAATAAC CAGGTTGAAT TAGACCTAAG CAGAGAGTTG 
    TCAGAGCTTA CTTCTGATGT GATCACCCGC TCGGCCTTCG GTAGCAGCCA 
    CGAGGAGGGC AAAGAGGTCT ACCAAGCACA GAAAGAGCTC CAAGAACTGG 
    CCTTCTCATC ATCATTAGAT GTGCCAGCTC TGGTTTTTCT AAGGAAATTA 
    CCAATCATAA GGGGGAACAC ACGAGCTCAT CAGCTCGTCA AGAAATCGAG 
    GACCATGCTC ATGGAGATAA TCGAAGGACG GCTTGCCAAA GTCGAAGCTG 
    CCGAAGCCGG CTATGGCAGT GATCTTCTTG GACTGATGCT GGAGGCGCGA 
    GCTCTGGAGA GGGAAGGGAA CGGCCTGGTT CTCACCACCC AGGAGATCAT 
    AGACGAGTGC AAGACCTTCT TCTTCGCGGG GCAAGACACT ACCTCCAACC 
    ACCTCGTCTG GACGATGTTC CTGCTGAGCA GCAACGCTCA GTGGCAAGAC 
    AAGCTACGGG AGGAGGTGCT GACAGTGTGT GGAGATGCAA TTCCAACGCC 
    CGACATGGCT AACAGGCTGA AACTGGTTAA CATGGTTCTC TTGGAATCAC 
    TGAGGCTGTA CAGCCCAGTA GTAATCATAA GGAGGATTGC TGGTTCAGAT 
    ATCGATCTTG GCAACCTAAA AATTCCCAAG GGAACTGTGC TTTCCATACC 
    GATCGCCAAG ATACACCGGG ACAGGGATGT ATGGGGACCC GATGCCGACG 
    AGTTCAACCC TGCAAGGTTC AAGAATGGCG TGTCGAGAGC CGCGAGCTAC 
    CCAAACGCGC TGCTGTCCTT CTCACAGGGT CCAAGAGGTT GCATCGGCCA 
    GACCTTCGCG ATGCTAGAGT CGCAGATCGC GATCGCCATG ATCCTCCAGA 
    GGTTCGAGTT TAGGCTGTCT CCATCGTACG TTCATGCTCC CATGGAGGCG 
    ATCACCTTGA GGCCCAGGTT TGGACTTCCT GTTGTCCTAA GGAATCTCCA 
    GGGATGAGAT GGACCGTACG TACTATTATA TATTATACAG TGTGTCGATC 
    TCTACGGTTC GTGCCTTCAT TATATATTTG CGCAATTTTC CTTTATTTAT 
    CCTACGGAAA AGGTAATGAG TG

    Gene models with high sequence identity

    1. AT2G46950.1 [+] show detail - cytochrome P450, family 709, subfamily B, polypeptide 2
      E-value: 2e-117; Score: 420.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Cytochrome P450 6.3e-103
    HMMPanther CYTOCHROME P450, SUBFAMILY 72 1.2e-183
    HMMPanther Cytochrome P450 1.2e-183
    superfamily Cytochrome P450 6.1e-108
    Coil coiled-coil 0
    FPrintScan Cytochrome P450, E-class, group I 1.4e-18
    FPrintScan Cytochrome P450, E-class, group I 1.4e-18
    FPrintScan Cytochrome P450, E-class, group I 1.4e-18
    FPrintScan Cytochrome P450, E-class, group I 1.4e-18
    FPrintScan Cytochrome P450, E-class, group I 1.4e-18
    FPrintScan Cytochrome P450, E-class, group I 1.4e-18
    FPrintScan Cytochrome P450, C-terminal 0.00000000028
    FPrintScan Cytochrome P450, C-terminal 0.00000000028
    FPrintScan Cytochrome P450, C-terminal 0.00000000028
    FPrintScan Cytochrome P450, C-terminal 0.00000000028
    HMMPfam Cytochrome P450 1.3e-82
    PatternScan Cytochrome P450, conserved site 0

    See the detailed result >

    AT2G46950.1

    Model type
    Protein coding
    Short Description
    cytochrome P450, family 709, subfamily B, polypeptide 2
    Curator Summary
    member of CYP709B
    Computational Description
    "cytochrome P450, family 709, subfamily B, polypeptide 2" (CYP709B2); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 709, subfamily B, polypeptide 3 (TAIR:AT4G27710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR