K23220

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23220

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23220

Determination of introduced cDNA(s)

  • J023115D04 - Rice Full-length cDNAs - Original: J023115D04

    full reading [+] show sequence

    Nucleotide sequence: J023115D04 - full reading 
    GGGTTTCCTG GCGGACTCCA AAAACCCTTC CTCAAACCCT CGCCCCCACA 
    ACGCCCCGCG ACAGGAGGAA GAAGCTTCTC GTCTGATTTT GTTCCTGGTG 
    ACTGAAAGCA GCAGAGAAGC AGATAGGCTC GCGGTGAGCC ATGGGAGAAG 
    GCGGAGACGG GAGGTCCTTC AATTTTCTTC AAGTTCTGTT TGAGGGTGTA 
    ATAGCTGGAG GTGCTGCCGG TGTTGTTGTT GAGACAGCTC TGTATCCTAT 
    TGATACAATA AAAACCAGGC TTCAGGCTGC GAAAGGTGGA AGTAAAATTC 
    AATGGAAAGG CTTGTATGCT GGGTTAGGTG GAAATATTGC TGGTGTTCTC 
    CCGGCTTCTG CAATCTTTAT AGGAGTGTAT GAACCAACCA AAAGAAAACT 
    GCTAGAAATG TTTCCTGAAA ATTTGAGTGC TGTGGCTCAT TTGACTGCAG 
    GGGCAATTGG AGGTGCTGCA TCTTCTCTTA TTCGTGTTCC CACAGAGGTG 
    GTTAAACAAA GGATGCAAAT GAGTCAATTC AAGACTGCAC CTGATGCTGT 
    TCGCCTTATT ATCCGTAAAG AAGGATTCAA AGGTCTTTAT GCTGGCTATG 
    GTTCCTTTCT GTTGCGAGAT CTACCATTTG ATGCTATTCA GTTTTGCATA 
    TATGAGCAAC TTCGAATAGG CTATAAACTG GCGGCAAAGC GAGACTTGAA 
    AGACGGAGAG AATGCACTTA TTGGTGCTTT CGCTGGCGCA ATTACTGGGG 
    CTATAACAAC ACCCCTCGAT GTTTTGAAGA CAAGATTGAT GGTTCAGGGA 
    CAAGCAAACC AATATAGGGG AATCATAAGC TGTGCTCAAA CAATTCTACG 
    AGAGGAAGGT GCTGGTGCTT TTTTGAAGGG TATTGAGCCA AGGGTATTAT 
    GGATTGGCAT TGGTGGATCC ATCTTCTTTG GTGTTTTGGA GAAAACGAAG 
    TCAATTCTAG CTGAGAGGAA CAGCCGTAAA GTACGAATAC TATGAAAGGG 
    GGATGATTTT GCGTAGATGC TGCTATTTTC CCAGGATGTC TACTGATATG 
    TGTGCTCGAT CAATTAATTT TAGGAGCTCC GATTCACATC CTTGTCAATC 
    CCATCCGAAT CTTGTATTTT GCTAGAGCAT TACATGGGGT TAAAGTTATA 
    ATTTCTGAAT TTCTTTTCGT CTGGCTAGCT TGTTTTGTAC TTGAGCTAAA 
    AAGATAATTT TCTGGAAGCG AAATGCTTCT GTTCAAACGG ATGATCTGTT 
    GTCATTGCAA AAAAGAGAAG TTCATTAGGA TAGTTTACTG CG

    Gene models with high sequence identity

    1. AT1G34065.1 [+] show detail - S-adenosylmethionine carrier 2
      E-value: 1e-97; Score: 353.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Mitochondrial carrier protein 5.4e-09
    FPrintScan Mitochondrial carrier protein 5.4e-09
    FPrintScan Mitochondrial carrier protein 5.4e-09
    FPrintScan Mitochondrial carrier protein 5.4e-09
    HMMPfam Mitochondrial substrate/solute carrier 1.8e-11
    HMMPfam Mitochondrial substrate/solute carrier 4.4e-20
    HMMPfam Mitochondrial substrate/solute carrier 8.2e-23
    HMMPanther MITOCHONDRIAL CARRIER PROTEIN 3.1e-115
    HMMPanther Mitochondrial substrate carrier 3.1e-115
    superfamily Mitochondrial substrate carrier 5.1e-69
    ProfileScan Mitochondrial substrate/solute carrier 10.735
    ProfileScan Mitochondrial substrate/solute carrier 23.886
    ProfileScan Mitochondrial substrate/solute carrier 24.036

    See the detailed result >

    AT1G34065.1

    Model type
    Protein coding
    Short Description
    S-adenosylmethionine carrier 2
    Computational Description
    S-adenosylmethionine carrier 2 (SAMC2); FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine carrier 1 (TAIR:AT4G39460.2); Has 26837 Blast hits to 14208 proteins in 451 species: Archae - 0; Bacteria - 2; Metazoa - 11303; Fungi - 7745; Plants - 4960; Viruses - 0; Other Eukaryotes - 2827 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR