K23230

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23230

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23230

Determination of introduced cDNA(s)

  • J023111M02 - Rice Full-length cDNAs - Original: J023111M02

    full reading [+] show sequence

    Nucleotide sequence: J023111M02 - full reading 
    GTGGCACAGA GACTCCTCGC CTCTGCTCCG CTGCTGCTTC CCTGTTCACC 
    CGCCATTAGC GCGACCGAGC TCGCTCGCTC CCGGTGCAAG TTGCACCGCC 
    TACCGGCGGC GGCCATGGAG GACGGTGCGG CGGCGCGGGA GGCGGAGAGG 
    TGGGAGGGGT ACGTCGACTG GAGGAACCGG CCGGCGGTGC GCGGCCGGCA 
    CGGCGGCATG CTCGCCGCCT CCTTCGTTCT TGTGGTGGAG GTGCTCGAGA 
    ACCTGGCGTT CCTGGCGAAC GCGAGCAACC TGGTGACCTA CCTGATGAAT 
    TTCATGCACT ACTCGCCGTC GCAGTCGGCG ACGACGGTGA CCAACTTCAT 
    GGGCACCGCC TTCCTCCTCG CCCTCCTTGG CGGCTTCCTC TCCGACGCCT 
    TCTTCACCAC CTACGCCATC TACCTCATCA GCGCCTTTGT GGAATTCCTG 
    GGGCTGGTGG TCCTGACGAT CCAGGCGAGG ACGCCGTCGC TGATGCCGCC 
    GGGGTGCGCC AAGGTTGCCG GCGCGGCGTG CGAGCCAGTG TCGGGGCCGA 
    AGAAGGCAAT GCTGTTCGCG GGGCTGTACG TGACGGCGCT GGTCATCGGC 
    GGCATCAAGG GCTCCCTCCC GTCGCACGGC GCCGAGCAGT TCGACGAGCA 
    CGCGCCGCGG GGGCGGAAGG GGCGCTCCAC CTTCTTCAAC TACTTCGTCT 
    TCTGCCTCTC CGTCGGCGCG CTCATCGCCG TCACGTTCGC CGTCTGGGTG 
    GAGGACAACA AGGGGTGGCA GTGGGGGTTC GGCATCTCCA CCATCGCCAT 
    CCTGCTCTCC ATCCCGGTGT TCGTCGCCGG CTCGAGGCTG TACCGCAACA 
    AGGTGCCCAC GGGGAGCCCG CTCACCACCA TCGCCAAGGT CGTCCTCGCC 
    GCCGCGCTCG CTCGCCGCGG CGGCGCGCAG AGCGCCAGCA ACGGCGCTGT 
    CATCGACCGC GCGCCCAGCC CCACGGGGAG CACGGACATG AAGGAGTACT 
    GCAAGCCCGG CGACATCTGC GGCGTCGCCG ACGGCGCCGC CGAGGTGGCT 
    ACCGAGCCGT CGCAGGAGCT GGTGTTCCTG AACCGGGCGG TGCAGCGGCA 
    GCCGCGGTGC GGGGCGCTGT CGTGCACGGT GCAGGAGGTG GAGGACGTCA 
    AGATCGTGCT CATGGTGCTC CCGATCTTCT TCTCCACCAT CATGCTCAAC 
    AGCTGCCTGG CGCAGCTGTC CACCTTCTCC GTGGAGCAGG CGGCGACGAT 
    GGACACCCGC GTCGGGGGGC TCAAGGTGCC GCCGGCGTCG CTGCCGGTGT 
    TCCCGGTCAC CTTCATCATC CTCCTCGCCC CGGTCTACGA CCACATCATC 
    ATCCCGTTCG CGCGACGCGC CACGGGCACG GAGATGGGGA TCACCCACCT 
    GCAGCGCATC GGCACGGGGC TCGTCCTCTC CATCGTCGCC ATGGCCGTCG 
    CCGCCGTGGT GGAGGTGAAG CGCAAGAACG TGGCGTCCAA CGCCGGAATG 
    CTCGACGCGG CGGCGCCGCT GCCCATCACC TTCTTCTGGA TCGCGTTCCA 
    GTACCTGTTC CTGGGGTCCG CCGACCTGTT CACGCTGGCG GGGCTGCTCG 
    AGTTCTTCTT CAGCGAGGCG CCGGCGAGGA TGCGGTCGCT GGCGACGTCG 
    CTGTCGTGGG CGTCGCTGGC GCTGGGGTAC TACCTGAGCT CGGTGCTGGT 
    GACGGTGGTG AACAGCGCGA CGGGGCGCGG CGGGCGGCGG GCGTGGCTGC 
    AGGGGGAGAA CCTGAACCAC TACCACCTGG AGAGGTTCTA CTGGGTGATG 
    TGTGTGCTCA GCACGCTCAA CTACCTCTTC TTCTTGTTCT GGGCCATCCG 
    GTACAAGTAC AGAAACGCCG GGGTCATCAA GGGATGATGA TCAATCTGTA 
    ATGCAGGGTT AACTGTTTAA TTATCTGGCA AGGTAAAAAA AGGAGGGAGG 
    TTAATTTGGT GGTCTTGAGG ATGCTCATTG CTGTGTGGAA TTGGTTGGCT 
    GGCTGTGGCC GATGAATGAA AAGAAGCAGC GATTAAGCAA GTTGTTC

    Gene models with high sequence identity

    1. AT1G69850.1 [+] show detail - nitrate transporter 1:2
      E-value: 0; Score: 645.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Major facilitator superfamily, general substrate transporter 1.5e-16
    HMMPfam Oligopeptide transporter 6.2e-80
    HMMPanther NITRATE TRANSPORTER (NTL1) 0
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 0

    See the detailed result >

    AT1G69850.1

    Model type
    Protein coding
    Short Description
    nitrate transporter 1:2
    Curator Summary
    Encodes an inducible component of low-affinity nitrate uptake. mRNA found primarily in root hairs and the epidermis of roots.
    Computational Description
    nitrate transporter 1:2 (NRT1:2); FUNCTIONS IN: transporter activity, calcium ion binding; INVOLVED IN: response to nematode; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G27040.1); Has 5870 Blast hits to 5639 proteins in 1033 species: Archae - 0; Bacteria - 2327; Metazoa - 503; Fungi - 400; Plants - 2186; Viruses - 0; Other Eukaryotes - 454 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR