K23231

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23231

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23231

Determination of introduced cDNA(s)

  • J033107P14 - Rice Full-length cDNAs - Original: J033107P14

    full reading [+] show sequence

    Nucleotide sequence: J033107P14 - full reading 
    GCTAGCAGTT CTTCCTTCCG TTCCTTCCCT CTATCTATCC TCCGCCTCGT 
    CCTCGCCACG CGCGAAGGCG GCGTCGATCG GTTCCCCCAT TTTTCTCATC 
    GATCCCTCGT GGCCTCCTCC CCGCCGCCGC GCCACCTCGT CTCGAAGATT 
    TCTTTGATGC GTGGTGGCAG TGGCGTTTGG ATCTTGGTGC CGCCATGAGT 
    CCGCCGGGGA GGAAGGCCCC GGCCGGTGCG GGCGGGATCC GTCGGTGGCT 
    CTCCACCGTC GTCGTGTCGG TGGTGGCTCT TGTGCTAACC CTAGTAGTGA 
    TATCGCTATC GGTGGGCTCG TCTCTGACCG GGGCATCGCT ACACGAGTAC 
    CTCTTTGTCA GACCTAGTGA TTCATCCAAG CTTACTGATG GGAACATGAA 
    TGGTACTGCC GTTGGTGTTC CATTACAAGA GGAAGTGTTG CAGGGTGGCA 
    AGGAAGTACC CGTGGAGCAC GGTGTTCAGA GTGGCGGCGT GAATTCGAGC 
    GAGACGGGTG AAATCGATAC CAAAGTACAA GATCCAGTTG TTACCGATGA 
    TACCGCGTCA GTGCCTGATG AGAGAAATCT CCCTGTCTCA TCGGATTCAT 
    CCGACAATCT TCAGAAGACT AATGAAGGTA GCTGTGATCT ATACCATGGA 
    CATTGGGTTT TTGATTCTTC TGGACCACTA TACACAAACA ACTCTTGCCC 
    GATCATCACG CAGATGCAGA ATTGTCAAGG AAATGGTCGA CCTGATAAGG 
    ATTATGAAAA TTATAGATGG AAACCAGAAC AGTGCATCCT ACCACGCTTT 
    GATGGACCAA AGTTCCTGGA GTTGATGAGA GGCAAGACAA TTGCATTTGT 
    TGGTGATTCA GTTGCCAGAA ATCAGATGGA ATCCCTCCTC TGCATTCTGT 
    GGCAGGTAGA GGCCCCAGTA AACCGTGGTA GCCGCAGGAT GAGCAAGTGG 
    ATTTTTAGGT CAACCTCAAC AATTATCGTC CGCATCTGGT CGTCTTGGTT 
    AGTGCACAGG TCAACTGAAG CTGTGGGGTT TGCTCCTAAG GGTATCGATA 
    AGGTTTTCCT GGATATCCCG GATGAGACCT TTATGGAATT TATCCCACGT 
    TTTGATGTGC TTGTCCTCTC CTCTGGGCAC TGGTTTGCCA AACGGTCTGC 
    TTATATCCTG AATGGCAATG TTGTTGGAGG GCAGCTCTGG TGGCCTCGTA 
    AAGCTGGAAA TATGCAGATC AACAATGTTG ATGCTTTTGG TACATCTGTT 
    GAGACATGCC TAACTGCTCT AGCTACCAAT CCAAATTTCA CAGGTATAGC 
    TATCGTGCGC ACATATTCAC CAGATCATTA TGAAGGTGGG GCTTGGAATA 
    CCGGTGGATC ATGCACTGGA AAGACTAAGC CCTTGGATGT GGTGGTGAGG 
    AATGGATTCA CGGACACCAT GTATGGAAAG CAGGTTTCAG GGTTCACAAA 
    AGCAGTGCAG AATTCTGGGA AACATGGTTC CAGGTTGAAA TTGATGGACA 
    TCACTGAGCC CTTTGCCCTG AGGCCTGATG GGCATCCTGG TCCATATAGA 
    AGTACTGACC CAAACAAGAA GACGCAAAGA GGTCCAGATG GAAGGCCTCC 
    ACCTCAGGAT TGCCTACATT GGTGCATGCC AGGACCTGTA GATACATGGA 
    ATGAGATGTT GCTAGAGACC ATACGAAGAG AGTTCGAGGG AGTGAGAAGC 
    TGAAGAAAAA CACTCATTGG CTGCTTGATT TCTATCATGT GATACGACCT 
    GCAAAAACTA ATTAAGCTTC TAGCATTGGT GTATACCTCA TTACATATCG 
    TGTTGTTGTT CTCCCACAGA TAGGAAGGAA ATATAGCTTT TGGTTGGACA 
    AAAAAACAAA TTGTAGGCAT GTTGTCAACA GTCGGGATAG AAGTACAGAG 
    GGGTAGACAG TTAGAGAGAG AGGTTATGAT GGATGATACT GTGCAATTGA 
    TCTGTATCTA GTTTTTTGTC TGACACATTC TTGGAGATAT GATCCGTTGA 
    CGAATTTTGT GGAACTACAT ATGATCTCAT ATCTCGAGCA CCTGTCAATC 
    TATGAGGCAG ATGCTGATTT TGGTTTATAA CAGATGAAAG AGAACTTGTT 
    C

    Gene models with high sequence identity

    1. AT5G51640.1 [+] show detail - Plant protein of unknown function (DUF828)
      E-value: 2e-158; Score: 556.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G51640.1

    Model type
    Protein coding
    Short Description
    Plant protein of unknown function (DUF828)
    Curator Summary
    Encodes leaf-senescence-related protein. A member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
    Computational Description
    YELLOW-LEAF-SPECIFIC GENE 7 (YLS7); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 18 (TAIR:AT4G25360.2); Has 1342 Blast hits to 1319 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1337; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR