K23237

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23237

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23237

Determination of introduced cDNA(s)

  • J013072K02 - Rice Full-length cDNAs - Original: J013072K02

    full reading [+] show sequence

    Nucleotide sequence: J013072K02 - full reading 
    GTCTCTCCTC CTCTCCGCGG CGCCACTCTC CTTCCGCCGC CGCCGCCGAC 
    GACGACGACG ACCTCCTCCT CCGGGTCGAC GAAACCCTAG CCGCGGCGCG 
    GAGGCCTGCT GCTTCCGGCT CCCGCTCCTC CCTGCCGAGT TCCCGCGAAC 
    CCTTCGCTGC CGGTGAAGGA AGGCGAGGAT GGACGGCGGC TACGGCTCGG 
    TCACAATCGT CCACGACGCG CGCTCCCCCG AGGACGTCTT CCAGGACTTC 
    TGCGGCCGCC GCTCCGGCAT CGTCAAGGCC CTCACCATCG AGGTGGAGAA 
    GTTCTACAAG CAGTGCGACC CTGAGAAGGA GAACTTGTGC CTCTATGGAC 
    TGCCTAATGG AACCTGGGCA GTGACTCTAC CAGCTGATGA AGTTCCTCCT 
    GAACTACCAG AGCCAGCCCT CGGGATAAAC TTCGCTCGTG ATGGAATGCA 
    GGAAAAAGAT TGGCTGTCCC TGATAGCTGT CCATAGTGAT TCATGGTTAC 
    TGTCTGTGGC ATTTTACTTT GGGGCTCGTT TTGGATTTGA TAAAAAGGCC 
    AGGGAACGGC TCTTCATGAT GACCAGTAGT CTCCCCACTG TCTTTGAAGT 
    TGTGTCAGGA GGTGTGAATA CACAATCAAA AACCGCCAAC GGCAGTAGCA 
    AAAACAAGTC AGGCTCTAAG CCACCAAAGC GGCCCAATTC TGACAGCAAG 
    CCACAGAAGC AGGTCCAGGC AAAGTATGAG GGAGAGAACG GCGGCAGAGG 
    AAATGGAGGT GATGAAGATC AAGCTGAAAC CATTTGTGGC GCCTGTGGTG 
    AGGCCTACGC AAACGGCGAG TTCTGGATTT GCTGTGACAT TTGTGAGACC 
    TGGTTCCATG GCAAATGTGT CCGAATCACC CCTGCCAAGG CGGAGCACAT 
    CAAGCATTAC AAGTGTCCTG GCTGCAGCAA CAAGAGGACC AGAGAATGAG 
    CGTCCATTTT TTCTTTCTAA TGTGATCCTG ATAGTAGTGG CAAAAAATAG 
    ATAGTAGTTT ACCCGTGAAC TTGGGGAACC TCAATTCCTA CTGGGTGACC 
    GTCGTTGCGG CAGCCCTGGT TGCCCCGCTG TATTAGTAGT AGCTACGTTA 
    CTTCTTGTAT CATACTGGAC ATAGTTGGTA GTGCCACAGT AATAGTAGTA 
    TCAATAGGCC ATCTTCTGCC TCCTTGGTTG GATGGATTGG TTAAGTGTCT 
    AAACTCTCTG ATTAATGATG TGATTTTTTA GTCT

    Gene models with high sequence identity

    1. AT2G02470.2 [+] show detail - alfin-like 6
      E-value: 6e-85; Score: 311.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Zinc finger, PHD-type, conserved site 0
    Gene3D no description 8.4e-15
    HMMSmart Zinc finger, PHD-type 8.2e-09
    HMMPfam Protein of unknown function DUF3594 7.1e-73
    HMMPfam Zinc finger, PHD-finger 8.9e-10
    superfamily Zinc finger, FYVE/PHD-type 5.8e-12
    HMMPanther PHD/F-BOX CONTAINING PROTEIN 5.4e-10
    ProfileScan Zinc finger, PHD-finger 9.152

    See the detailed result >

    AT2G02470.2

    Model type
    Protein coding
    Short Description
    alfin-like 6
    Curator Summary
    AL6 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
    Computational Description
    alfin-like 6 (AL6); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 7 (TAIR:AT1G14510.1).
    Link
    InterPro Scan - TAIR