K23240

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23240

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23240

Determination of introduced cDNA(s)

  • J023020B01 - Rice Full-length cDNAs - Original: J023020B01

    full reading [+] show sequence

    Nucleotide sequence: J023020B01 - full reading 
    GATTGAATCG GGCACGTCTC CTACTTTCCT CGCGCGGCGG CGGAGCTCAC 
    ATGGATTCGG CTTCCTCCAC TGCTGCAAAG CGCGGCGGCG CCCTCACCCT 
    AACGGCCTCA CCCAGTCGGA AGGATGGAGA CCCCCCGGCA TGACGACGAG 
    TCCCACGGAG GGGCCGCGGT GACGGCGCTG CTGCACGAGA TGCTGCTCCG 
    GGCTCGCCGG GATGGGGAGG AGCCGGAGCT GTCGGACGAG CAGCTGCGCT 
    CCAACGACCA GCTCCAGGAA GACGAGATGC TGGCACTAGA GGCAATTTAT 
    GGAGACAATA TAAGCATTTT AAGTGCAAAG GATGGACTAC GTTGTTTCCA 
    GGTCCATGTG CACTGCGAAA TTCCTGATGG CATCAGTGTA TCCGCAGAGC 
    TATCTCGGGA TGATAATCGT GACCAGAACA GTCGATTCTT TGACACATTC 
    AGCGTCCAGC ACTTGGCTCC AATTTCATTC ACATGCCTTA TGCCTCCATC 
    ATACCCAAGC CATCATGCTC CGTACTTTAC TCTCAGTTCA CAGTGGTTGG 
    ACACTGTGAA AGTTTCCTCC CTTTGCCTCA TGCTGGACAC AATCTGGTCA 
    CAACAACTTG GACTGGAAGT AGTTTATGGG TGGGTGCAAT GGCTGCAGAG 
    CTCTGCACTT TCTCATCTTG GTTTTAATGA TGGTATAGTC ATACAACAGC 
    CTGATAGTAT GATGGGTCCT GTGGATGTTC GTGTTGTTGC AGAGATTGTG 
    TCCGTAGAAT CTGCTGTTCA ATGGTTAATC AGCTACAATG AGGAGCAATG 
    CCATGAATCT TTTCTAATTG GCCTTCATGA CTGCATGATT TGTTTCACGG 
    AGCGTGCAGG TAATTGGTAT GCTTCAGTTC ATACCTGTGT TGTGAAGATA 
    ATACTTTTCC CAGTGTTTAC CTCCTATTGT TTCATAATTT CATCACTACC 
    AGAACTGAAA TTTTCAAAAC ATTATTCCAT TACAAGCTTC TTTACCGAGT 
    TTGTTATCAC AAAAAGAAAA ATGATTTGTA GTCAGTGCTC TGACAGGTAA 
    TTATATTCAT GTCCCATTGT TCTAATGAAT AACCATAGCA GTCAAAGTTC 
    CATCATTTAT GTTCAGTCTG GGCACTTTAA AATTGAATCC ATATGTCTGT 
    TCATTCCCCT CAGGTATTGA CTTCATTAAA CTTCCATGCG GGCATTACTT 
    TTGTCAGAGG TGCATGGAAA CGTACTCAAG GATGCATGTC GCAGAAGGAA 
    CAGTGCTGAA ATTGCTGTGT CCTAATGACA AGTGCGGGGA CATTATTCCT 
    CCAAGTCTAC TAAAGAGGAT GCTAGGAGAC AAAGATTTTG AACGATGGGA 
    AAGATTGACA CTTCAGAAGA CTCTAGACTC AATGTCAGAC GTGGCTTACT 
    GTCCAAGATG TGTAACAGCT TGCCTGGAAG ACGAGGAGAA CAACGCCCAG 
    TGCTCCAAGT GCTTCTTCAG CTTCTGCACC CGCTGCAGAT ACCTTCGTCA 
    TATAGGAGAG AGATGCATTA GTCCAGAAGA AAAACTTCTT TCCTTACAGG 
    ATCGCAATAA GGTGCGTCAG TTAAGCAAAG GAAACTTTGC CAGGAGAATT 
    AACTTGGCGA ATGAGATATC CAGCATCAAG GAAGTGCTTC GTTCTTCTGT 
    TCTGTGTCCA CATTGTGGTA CTGCCATCTC ACGAGTATCA GGCTGCGACC 
    ACATGTTATG CAGTAACTGT AGGCAACCGT TCTGCTATTC CTGTGGCAAG 
    CCACTGCATC GTGGCCATTC AAGTGCAGAA TTGATCAGGA GAATTCGGCA 
    GGAGAAACAC TGAAGGTGAA TCCAAGTAGT TTGATCACAG AGATGAAGAA 
    AGAACTGGTA GGGGAACGAT CAAGACAGCA TCCGTGCTCG ACTTGTCGCC 
    AACTAAATCC CAAGATGGGA AATAACAACC ATATCTTCTG CTGGGCATGC 
    CAAGTTCATT ACTGTGCGCT GTGCCGCATG GTGGTGCGGA AGAGCTCGGA 
    GCATTATGGT CCCCGTGGAT GCAAGCGGCA CAGTGTCGAC CCCTAGATCC 
    CTCCGGCTCG AGATAAGCAA AAATGTGACT CTCGTTCAGA ACACATAGAC 
    TTGAGAGGTG ATCCGTTGGC GGAGCATTGA TCGGTTTCAG CTATGGTTTA 
    CTTCTTTCAT CCGGACAATG TATGGTCTGT CATGAATTGT TTTGTCAAAG 
    CAACCGAACT CTCAACCTCA AACGACATGT TCTCTCTATA ATAATGTTTT 
    CCATTGAAAT GATTTCGTTT GTTTGATGTG TCAAGTGTGC GAGTGTACCT 
    GTAACATAGT TGTAGCAGCA GGATATAGGG GGAAAAAGGT GAGTGAATTA 
    CATATTTACA GTTTGTGTCA TCTTCTATTA TGAAAGTTTT CTCCTTTTCG 
    AATTTTTTTT ATGAAAGATT TACTTGGAAC C

    Gene models with high sequence identity

    1. AT1G32340.1 [+] show detail - NDR1/HIN1-like 8
      E-value: 2e-87; Score: 92.80

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam RWD 4.8e-20
    HMMPfam Zinc finger, C6HC-type 2.4e-08
    HMMPfam Zinc finger, C6HC-type 9.7e-10
    PatternScan Zinc finger, RING-type, conserved site 0
    HMMPanther RING FINGER PROTEIN 14 (ANDROGEN RECEPTOR-ASS 3e-33
    HMMPanther ARIADNE RING ZINC FINGER 3e-33
    HMMPanther RING FINGER PROTEIN 14 (ANDROGEN RECEPTOR-ASS 2e-19
    HMMPanther ARIADNE RING ZINC FINGER 2e-19
    HMMPanther RING FINGER PROTEIN 14 (ANDROGEN RECEPTOR-ASS 2.2e-101
    HMMPanther ARIADNE RING ZINC FINGER 2.2e-101
    superfamily Ubiquitin-conjugating enzyme/RWD-like 8e-19
    superfamily RING/U-box 2.6e-07
    superfamily RING/U-box 1.9e-12
    superfamily RING/U-box 9.8e-06
    ProfileScan RWD 16.602
    ProfileScan Zinc finger, B-box 8.887
    HMMSmart RWD 4.9e-17
    HMMSmart Zinc finger, RING-type 0.18
    HMMSmart Zinc finger, C6HC-type 2.8e-11
    HMMSmart Zinc finger, C6HC-type 0.018
    HMMSmart Zinc finger, RING-type 2.5
    Gene3D Ubiquitin-conjugating enzyme/RWD-like 2.3e-09

    See the detailed result >

    AT1G32340.1

    Model type
    Protein coding
    Short Description
    NDR1/HIN1-like 8
    Curator Summary
    Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not detected under normal conditions and in response to cucumber mosaic virus or spermine.
    Computational Description
    NDR1/HIN1-like 8 (NHL8); FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), RWD (InterPro:IPR006575); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G14250.1); Has 3653 Blast hits to 3199 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 1736; Fungi - 604; Plants - 670; Viruses - 7; Other Eukaryotes - 636 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR