K23323

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23323

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23323

Determination of introduced cDNA(s)

  • J023149J24 - Rice Full-length cDNAs - Original: J023149J24

    full reading [+] show sequence

    Nucleotide sequence: J023149J24 - full reading 
    GGAAGGCCAG CCAAAGGAAA GGAGAAAGCG CGGCCATGGC GGAAGACGCG 
    CCGCCGTCGT CGCTTCCGCT GCTGCTGCCG CGGAAGTCGT TGTCCTCGTC 
    CTCCGCGCAG CGCAAGCAGC AGTACGCGCG GTGCGTGTCG CACGCTGGGG 
    ACGAGCTCCA CAGCTTCCGC TCCTGCCTCG CGTGGATGTG CGTCGACCAC 
    TCCACCCGCG CCCGCGGCGC CGCGTCGTGG GCGGCCTTCC TCCTCCTCGC 
    CGTCGCCGCC CCGTCCGCGG CCACCCTCGC GCTCCCCTCC CCGGTCGGCG 
    GCGGGGGGTC GCCGTTCGAC GGGCAGGTCC AGGTGTCGCT CACCCTGGCC 
    GCCGCGCTCG CCTACCTCAC CCTCACGGCG CTCCTCCAGG GCCGCGGCCT 
    CCGCCGCCTG CTCTACCTCG ACCGCCTCCG CGACGACTCC GAGGAGGTCC 
    GGTCCGGCTA CATCGAGGAG CTCGCGGGCT CCTTCCGCGT CCTCGCCTGC 
    TTCCTCCTCC CCTGCACGCT CGCCGAGGCC GCCTACAAGG CGTACTGGTA 
    CCTCGCCGCG CCGCCGTTCC GCTCCCCGTG GTGGTCCGCC GCCGCGTGCG 
    CCGTCGAGGT CGCCTCCTGG GCCTACCGCA CCGCCGTCTT CTTCATGGTC 
    TGCGTCCTCT TCCGGACCAT CTGCTACCTG CAGATCCTCC GGATGAAGGG 
    CTTCGCGCGC GAGTTCTGCA GGTTCGCCGA CGTCGCCGCC GTGCTCGAGA 
    GCCACCGCCG CATCAGGAAG CAGCTCCACA GGATCAGCCA CCGCTACCGC 
    CGCTTCATAC TCTGCTGCCT CGTCCTCGTC ACCACCAGCC AGTTCGCCGC 
    CCTGCTTGCC ACCACCAGGC CGCACGCGCA GATCAACCTC GCCACCGCCG 
    GCGAGCTCGC GCTCTGCTCG CTGAGCCTCG TGGCCGGGCT GCTGGTGTGC 
    CTCCAGAGCG CGGCGAAGAT CACGCACAAG ACGCAGGCGA TCACGAGCGT 
    GGCGGCGGGG TGGCACGCCG ACGCCACCAT CAACGCCTTC GACAACGACC 
    AGGAGGACCC CAACCCGGAC CTCCCCCGCA TCGTCGGCTA CCTGGTGCCC 
    GTGAACGCCT ACTGGATGGC CTCCGGCGAG TCCTCGTCGG ACTCCTCCTC 
    CTCCTCCTCC TCCAGCGACG ACGACGACTC CGGCCACCCC AAGTCCAAGT 
    ACATCCCTTT CCAGAACAAC CACTGCTTCC AGCAGAGGCA GGCACTTGTG 
    ACGTACCTGG AGAACAACCG GGCCGGCATC ACGGTGTACG GCTTCGTCGT 
    CGACCGGACG TGGCTGCACG CGCTGTTCAT GATCGAGTTC TCCCTCGTCA 
    TGTGGCTGCT GGGGAAGACG GTCGGCATAT CCTGAGGCCT GAAGGAGCTT 
    TTGCCTCCTG TTGAAGCTTT CAGCTCTCTC TCTGCTCTGC AGCCGTGCCG 
    AGATTTCTGA TGATCAAAGA TCTCTGCATC GTCTCATATT GCTTCCTGGA 
    TTGTACAATA CAAAATCGAG TGCAGAAATT GCAGATAATA GCTCAGTTTC 
    TGTGCCATGT CCGGCACAAA AACGAAGCAA CAGTTCTGAA GTTTTTAGCT 
    GTATGTTTTT CTTTAAAAAT TTTTATGGTT CTTTGTTTGA GGCAGATTCT 
    GATGGAGCAT TAGTTGTATG AAAAATAATG GGATGGGATA GTTGTCCAGC 
    TTG

    Gene models with high sequence identity

    1. AT3G20300.1 [+] show detail - Protein of unknown function (DUF3537)
      E-value: 8e-75; Score: 278.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF3537 2.3e-146
    FPrintScan PRICHEXTENSN 6.1e-09
    FPrintScan PRICHEXTENSN 6.1e-09
    FPrintScan PRICHEXTENSN 6.1e-09
    FPrintScan PRICHEXTENSN 6.1e-09
    FPrintScan PRICHEXTENSN 6.1e-09

    See the detailed result >

    AT3G20300.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF3537)
    Computational Description
    Protein of unknown function (DUF3537); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3537 (InterPro:IPR021924); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3537) (TAIR:AT1G50630.1); Has 143 Blast hits to 143 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR