K23323

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23323

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23323

Determination of introduced cDNA(s)

  • J023149J24 - Rice Full-length cDNAs - Original: J023149J24

    full reading [+] show sequence

    Nucleotide sequence: J023149J24 - full reading
    GGAAGGCCAG CCAAAGGAAA GGAGAAAGCG CGGCCATGGC GGAAGACGCG 
    CCGCCGTCGT CGCTTCCGCT GCTGCTGCCG CGGAAGTCGT TGTCCTCGTC
    CTCCGCGCAG CGCAAGCAGC AGTACGCGCG GTGCGTGTCG CACGCTGGGG
    ACGAGCTCCA CAGCTTCCGC TCCTGCCTCG CGTGGATGTG CGTCGACCAC
    TCCACCCGCG CCCGCGGCGC CGCGTCGTGG GCGGCCTTCC TCCTCCTCGC
    CGTCGCCGCC CCGTCCGCGG CCACCCTCGC GCTCCCCTCC CCGGTCGGCG
    GCGGGGGGTC GCCGTTCGAC GGGCAGGTCC AGGTGTCGCT CACCCTGGCC
    GCCGCGCTCG CCTACCTCAC CCTCACGGCG CTCCTCCAGG GCCGCGGCCT
    CCGCCGCCTG CTCTACCTCG ACCGCCTCCG CGACGACTCC GAGGAGGTCC
    GGTCCGGCTA CATCGAGGAG CTCGCGGGCT CCTTCCGCGT CCTCGCCTGC
    TTCCTCCTCC CCTGCACGCT CGCCGAGGCC GCCTACAAGG CGTACTGGTA
    CCTCGCCGCG CCGCCGTTCC GCTCCCCGTG GTGGTCCGCC GCCGCGTGCG
    CCGTCGAGGT CGCCTCCTGG GCCTACCGCA CCGCCGTCTT CTTCATGGTC
    TGCGTCCTCT TCCGGACCAT CTGCTACCTG CAGATCCTCC GGATGAAGGG
    CTTCGCGCGC GAGTTCTGCA GGTTCGCCGA CGTCGCCGCC GTGCTCGAGA
    GCCACCGCCG CATCAGGAAG CAGCTCCACA GGATCAGCCA CCGCTACCGC
    CGCTTCATAC TCTGCTGCCT CGTCCTCGTC ACCACCAGCC AGTTCGCCGC
    CCTGCTTGCC ACCACCAGGC CGCACGCGCA GATCAACCTC GCCACCGCCG
    GCGAGCTCGC GCTCTGCTCG CTGAGCCTCG TGGCCGGGCT GCTGGTGTGC
    CTCCAGAGCG CGGCGAAGAT CACGCACAAG ACGCAGGCGA TCACGAGCGT
    GGCGGCGGGG TGGCACGCCG ACGCCACCAT CAACGCCTTC GACAACGACC
    AGGAGGACCC CAACCCGGAC CTCCCCCGCA TCGTCGGCTA CCTGGTGCCC
    GTGAACGCCT ACTGGATGGC CTCCGGCGAG TCCTCGTCGG ACTCCTCCTC
    CTCCTCCTCC TCCAGCGACG ACGACGACTC CGGCCACCCC AAGTCCAAGT
    ACATCCCTTT CCAGAACAAC CACTGCTTCC AGCAGAGGCA GGCACTTGTG
    ACGTACCTGG AGAACAACCG GGCCGGCATC ACGGTGTACG GCTTCGTCGT
    CGACCGGACG TGGCTGCACG CGCTGTTCAT GATCGAGTTC TCCCTCGTCA
    TGTGGCTGCT GGGGAAGACG GTCGGCATAT CCTGAGGCCT GAAGGAGCTT
    TTGCCTCCTG TTGAAGCTTT CAGCTCTCTC TCTGCTCTGC AGCCGTGCCG
    AGATTTCTGA TGATCAAAGA TCTCTGCATC GTCTCATATT GCTTCCTGGA
    TTGTACAATA CAAAATCGAG TGCAGAAATT GCAGATAATA GCTCAGTTTC
    TGTGCCATGT CCGGCACAAA AACGAAGCAA CAGTTCTGAA GTTTTTAGCT
    GTATGTTTTT CTTTAAAAAT TTTTATGGTT CTTTGTTTGA GGCAGATTCT
    GATGGAGCAT TAGTTGTATG AAAAATAATG GGATGGGATA GTTGTCCAGC
    TTG

    Gene models with high sequence identity

    1. AT3G20300.1 [+] show detail - Protein of unknown function (DUF3537)
      E-value: 8e-75; Score: 278.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF3537 2.3e-146
    FPrintScan PRICHEXTENSN 0.0000000061
    FPrintScan PRICHEXTENSN 0.0000000061
    FPrintScan PRICHEXTENSN 0.0000000061
    FPrintScan PRICHEXTENSN 0.0000000061
    FPrintScan PRICHEXTENSN 0.0000000061

    See the detailed result >

    AT3G20300.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF3537)
    Computational Description
    Protein of unknown function (DUF3537); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3537 (InterPro:IPR021924); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3537) (TAIR:AT1G50630.1); Has 143 Blast hits to 143 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR