K23325

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23325

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23325

Determination of introduced cDNA(s)

  • J033109G07 - Rice Full-length cDNAs - Original: J033109G07

    full reading [+] show sequence

    Nucleotide sequence: J033109G07 - full reading
    GAGGGTTCCG ACGAATCCCG AGCTCGGAGG CCGATGGCGT CGTCGTCGTC 
    GGCGGCGTCG GGGAAGTCGC GGCCGGAGTG CATCAACTCG TCGAACCCGT
    TCCACGAGTG CTCCGACTAC TGCCTCCGCA AGATCGCCGA GGCCAAGGAG
    CGCATCGAGG ACGAGCAGCG GCCGCCGGTG GACCGCACCG TCCACCCCGA
    CTGCATCAAC GCCTCCAACC CCTACCACGT CTGCTCCGAG TACTGCTTCA
    AGAGGATCGC CGACGCCAAA TCAGGGTTGG AGCGTGCGGA GCAAGAACCG
    CCTTCTGCAG ACGCTGGCAA ATCCGACGCT GCCCAAGCTG AGGGTGGTGG
    TGGTGATGAT GATGCGGAGC AGGAGGACGC CGGCTCAGAC GACGGTTACC
    CGCAGATGAC AGAGAAGCAG AAGAAGCTAT TTGAGTTGCG GCTGAAGATG
    AATGAAGCTA GGAAGGCAAA TCAGCAAGCG ATGGTGGCAG AGAAGAAGAG
    GATGGAGCCT CGCGCTGAGA GTAGAGGTGT TTCTAAACAA AAGTGGCTGG
    AAGACAGAAA AAAGAAGATC GGAAAGCTTC TTGACTCAAA TGGCCTGGAC
    ATGACAAAGT CTTACATGCT CGATACACAG GAGTCGGCCG AAGCAAAATA
    CAAGAAGTGG GAAAAGGAAC CTGCACCATA TGGTTGGGAT GTTTTCAACC
    AGAAGACCTT ATATGATGCA TACAAAAAGA GGACCAAGAA CATTGAGGTT
    GACATGGAGG CATACAACAA AGCAAAGGAA GCCGATCCTG AATTTTATCG
    GGACGCTTCA AGTCTCCAAT ATGGGAAGGT GTCTAAGGTC CCGGAAGAAA
    ACATAGACAG GATGGTTAAT GAGCTTAAGG AACGGGATGA GAAACGGAAA
    GCATTCAGCA GGAGGCGCAA GTTCCATGAA GACAAGGACA TTGACTCGAT
    CAATGACCGG AACGAACACT TCAACAAGAA GGTTGAGAGG GCATTTGGCA
    AGTATACTCT TGAGATCAAG AACAATCTTG AAAGGGGGAC TGCCTTGCCA
    GATTAGAAAC TCTGCACACT CTGCTGGTAG AGAGTGGACA TGTTGTCTGT
    TTCCCCAGCT GTCTTTTGCT TGTAAGTTGT AACCTATCAA CAATTTGCTT
    GGAAACTGTA ACTGTAAGAA AGCCAACTCG GATGTAATGT CGTGAGAATA
    TAGCATATTC GAGAAGTTGT GTATCCAAAA TGAGCGGAAT CATTAACTAT
    AGTGATTTTG CAATGTATCC AAATGAGCAT AATCATTAAC TGTAGTGGTG
    TGCTGGTGCC CC

    Gene models with high sequence identity

    1. AT2G16860.1 [+] show detail - GCIP-interacting family protein
      E-value: 2e-108; Score: 389.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther mRNA splicing factor SYF2 1.8e-43
    Coil coiled-coil 0
    HMMPfam mRNA splicing factor SYF2 3.4e-43

    See the detailed result >

    AT2G16860.1

    Model type
    Protein coding
    Short Description
    GCIP-interacting family protein
    Computational Description
    GCIP-interacting family protein; CONTAINS InterPro DOMAIN/s: mRNA splicing factor SYF2 (InterPro:IPR013260); Has 2586 Blast hits to 2013 proteins in 293 species: Archae - 27; Bacteria - 123; Metazoa - 700; Fungi - 265; Plants - 138; Viruses - 7; Other Eukaryotes - 1326 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR