K23337

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23337

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K23337

Determination of introduced cDNA(s)

  • J013101K13 - Rice Full-length cDNAs - Original: J013101K13

    full reading [+] show sequence

    Nucleotide sequence: J013101K13 - full reading 
    GACCATCGGT CAGTCGCACA GATAACACCG TAGTATCAGA CAAGACCTCA 
    TCTCAGTATC CAGCCGAGAG GAAATCAAAG GAAGAGAAGG GGAAAAGCAA 
    TGGCGGGCAA GGACGACGAC GTGAAGGTGC TCGGCCTGGT GATGAGCCCC 
    TTCGCGATCC GCGTATGCAT CGCGCTCAAG TTGAAGGGCG TGAGCTACGA 
    GTACATCGAG GAGGACCTCG CCAACAAGAG CGAGCTCCTC CTCAGCTCCA 
    ACCCGGTGCA CAAGAAGATC CCCGTCCTCA TCCATGGCGG CAAGCCCGTC 
    TCCGAGTCGC TCGTCATCGT GCAGTACGTC GACGAGGCCT GGGCGCCCTC 
    CCCCACGTCG CCCTCCATCC TCCCCGCCGA CCCCTACGAC CGCGCCGTCG 
    CCCGCTTCTG GGCCGCCTAC GTCGACGACA AGATGGTCCC TGGTATGGTT 
    GGCGTTTTGA GGGCGGCGAC GGAGGAGGAG AGGGCGGCGA AGGCCGACGA 
    GACGCTGGCG GCGATGGCGC AGCTGGAGAA GGCGTTCGCC GAGGTGGCCG 
    CGAAGAACGG GAAGCCCTTC TTCGGCGGCG ACACCGTCGG GTACGTCGAC 
    CTCGCGCTCG GTTGCAACCT GCACTTTCTC GAAGCGATCC GCAGGTTGCA 
    CGGCGTGGCG TTGGTCGACG CCGGCAAGAC CCCGCTCCTG GCGGCGTGGG 
    CGGAGCGGTT CGTGGAGGTC GAGGCGGCCA AGGGGGTGGT GCCGGACGCG 
    GACGACGCCG TGGAGTTCGC CAGGAAAGTC CAGGCTCGTG TAGCAGCTGC 
    TGCTGCTTCC ACCGCTGCCA AGTGAGTGGA AAATCGTTTT CGATTGGATC 
    ATTGGGTTTC TTGTAATAAA GAAAAAATCG TGTTATTACA GTGCCATTTT 
    CAAGTCATGG TTAGTTTATT TGTGGGGTTA TTAATGTGTA AAGTCTGGAC 
    ATGTATGCGT GTTATGTTCT CTGGTTCATC GATCATAAGC AGCTATACAG 
    ACATACAGTG CTAGTGCTAT TGCC

    Gene models with high sequence identity

    1. AT1G10370.1 [+] show detail - Glutathione S-transferase family protein
      E-value: 3e-52; Score: 202.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Thioredoxin fold 5e-26
    Gene3D Glutathione S-transferase, C-terminal-like 5.8e-46
    HMMPfam Glutathione S-transferase, N-terminal 0.00000000000049
    HMMPfam Glutathione S-transferase, C-terminal 0.0000001
    FPrintScan PRICHEXTENSN 0.0000000014
    FPrintScan PRICHEXTENSN 0.0000000014
    FPrintScan PRICHEXTENSN 0.0000000014
    FPrintScan PRICHEXTENSN 0.0000000014
    superfamily Glutathione S-transferase, C-terminal-like 2e-40
    superfamily Thioredoxin-like fold 2.1e-21
    HMMPanther GLUTATHIONE S-TRANSFERASE 1.5e-112
    HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 1.5e-112
    ProfileScan Glutathione S-transferase, N-terminal 19.404
    ProfileScan Glutathione S-transferase/chloride channel, C-terminal 19.75

    See the detailed result >

    AT1G10370.1

    Model type
    Protein coding
    Short Description
    Glutathione S-transferase family protein
    Computational Description
    EARLY-RESPONSIVE TO DEHYDRATION 9 (ERD9); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: response to water deprivation, response to karrikin, toxin catabolic process; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase TAU 18 (TAIR:AT1G10360.1); Has 6064 Blast hits to 6029 proteins in 1096 species: Archae - 0; Bacteria - 2896; Metazoa - 397; Fungi - 130; Plants - 2065; Viruses - 0; Other Eukaryotes - 576 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR