K23339

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23339

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • increased length (PATO:0000573)
    (Rosette leaf::Shape::long)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23339

Determination of introduced cDNA(s)

  • J023012K03 - Rice Full-length cDNAs - Original: J023012K03

    full reading [+] show sequence

    Nucleotide sequence: J023012K03 - full reading 
    GTGGCACTTG TAGTACTTTA CTGCACGAAG AACACCATGG CACAACGTGT 
    CCAAGAAGAA GATGAGCAGA TGATGAGCAC CGATGACTTG ATCCAAGCTC 
    AGATCAAGCT CTACCACCAC TGCTTCGCCT TCATCAAGTC CACAGCACTT 
    TGGGCCGCCA TCGACCTGCG CATTGCGGAT GTCATCCACC GCAATGGCGG 
    AGCCGCCACC TTATCCGACC TCGCGCTCAA CGTCGGGCTG CACCCGACCA 
    AGCTCTCCCA CCTCCGGCGG CTCATGCGCG TGCTCACCGT CACTGGCATA 
    TTCGCTGTCG AAGACCGCAA TGGTGAGGCC ATGTACACAC TCACCCGAGT 
    CTCTCGCCTT CTCCTCAACA GCGATGGGGA GGGAACGCAC GCCTTGTCCC 
    AAATGGCGCG TGTGTTAGCC AACCCACTCG CCGTGATCTC TCATTTCAGC 
    ATTCACGAGT GGTTCACCAC CGAGAAGGCA ACCACCATGA CACCCTTCGA 
    GGTGGCGCAT GGTTGCACGC GGTGGGAGAT GATAGCGAAC GATGCCAAGG 
    ATGGCAGCGT GTTCAACGCC GGCATGGTTG AGGACAGCCG TGTCGCCATG 
    GATATCATCT TGAAGGAGAG CTGTGGCATT TTCCAGGGCA TCAGCTCTCT 
    TATTGATGTT GGTGGTGGCC ATGGCGCTGC AGCTGCAGCC ATAGCAACGG 
    CATTCCCAAA CATCAAGTGC ACTGTGCTGG ATCTGCCTCA TATTGTTGCT 
    GAGGCTCCCG CCACTCATAG CAACATCCAG TTTATAGGTG GTGACCTTTT 
    CAAGTTCATT CCAGCAGCCG ATGTTGTTCT ACTTAAGTGT CTTTTGCACT 
    GTTGGCAAGA TGATGATTGT GTCAAGATTC TGCGACTATG CAAAGAGGCA 
    ATCCCGGCAA GAGATGCTGG GGGAAAGGTG ATAATTATTG AGGTGGTTGT 
    CGGGATTGGA TCCGAGGAAA TTGTTCCTAA GGAGATGCAA CTTTTGTTTG 
    ATGTTTTCAT GATGTACATC GATGGCATCG AGCGAGAGGA GTATGAATGG 
    AAGAAGATTT TCTTAGAGGC TGGATTCAGT GACTACAAAA TCACCCCGGT 
    GCTAGGTGCC CGATCAATCA TCGAGGTTTA CCCTTGATGC TTCTGAAGGT 
    GTACATGTGC ATCTCTCCGT GGAACCTATT CTAGTTCAGA CAATTGAACT 
    AAATACATAA CATGTTGGTT ATAAACATGT TTATGTTAGT CTTTTGATTT 
    CCTTTCGTTC ATGAGTCAGT AGCCTTGAGG CGTGTGCATG TTCACACTGA 
    GGCCATCGTT TTTTCGTTTT TCTGTTGTCG TATGAGCTAC AGTATGTGCT 
    CTGTGGGATG GTACAACTTA TGTACGTCGT GGCTTGAGTC TTGGGCATAT 
    TGGTAGCCCG TGATTTCCAT TTTTATTTTC ATCACAATAA GAGGAAGAGA 
    AAACTGAAAA GCTGCAATGC AGTTCGCAGC GCC

    Gene models with high sequence identity

    1. AT4G35160.1 [+] show detail - O-methyltransferase family protein
      E-value: 7e-33; Score: 139.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR O-methyltransferase, COMT, eukaryota 1e-142
    superfamily S-adenosyl-L-methionine-dependent methyltrans 1.8e-72
    superfamily "Winged helix" DNA-binding domain 1.1e-31
    HMMPanther O-METHYLTRANSFERASE 6.9e-51
    Gene3D Winged helix-turn-helix transcription repressor DNA-binding 7.9e-30
    Gene3D no description 4.9e-67
    HMMPfam O-methyltransferase, family 2 2.6e-65
    HMMPfam Plant methyltransferase dimerisation 5.2e-10

    See the detailed result >

    AT4G35160.1

    Model type
    Protein coding
    Short Description
    O-methyltransferase family protein
    Computational Description
    O-methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, O-methyltransferase activity, protein dimerization activity; LOCATED IN: cytosol; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT4G35150.1); Has 3345 Blast hits to 3334 proteins in 568 species: Archae - 3; Bacteria - 935; Metazoa - 112; Fungi - 688; Plants - 1514; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR