K23339

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23339

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • increased length (PATO:0000573)
    (Rosette leaf::Shape::long)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23339

Determination of introduced cDNA(s)

  • J023012K03 - Rice Full-length cDNAs - Original: J023012K03

    full reading [+] show sequence

    Nucleotide sequence: J023012K03 - full reading
    GTGGCACTTG TAGTACTTTA CTGCACGAAG AACACCATGG CACAACGTGT 
    CCAAGAAGAA GATGAGCAGA TGATGAGCAC CGATGACTTG ATCCAAGCTC
    AGATCAAGCT CTACCACCAC TGCTTCGCCT TCATCAAGTC CACAGCACTT
    TGGGCCGCCA TCGACCTGCG CATTGCGGAT GTCATCCACC GCAATGGCGG
    AGCCGCCACC TTATCCGACC TCGCGCTCAA CGTCGGGCTG CACCCGACCA
    AGCTCTCCCA CCTCCGGCGG CTCATGCGCG TGCTCACCGT CACTGGCATA
    TTCGCTGTCG AAGACCGCAA TGGTGAGGCC ATGTACACAC TCACCCGAGT
    CTCTCGCCTT CTCCTCAACA GCGATGGGGA GGGAACGCAC GCCTTGTCCC
    AAATGGCGCG TGTGTTAGCC AACCCACTCG CCGTGATCTC TCATTTCAGC
    ATTCACGAGT GGTTCACCAC CGAGAAGGCA ACCACCATGA CACCCTTCGA
    GGTGGCGCAT GGTTGCACGC GGTGGGAGAT GATAGCGAAC GATGCCAAGG
    ATGGCAGCGT GTTCAACGCC GGCATGGTTG AGGACAGCCG TGTCGCCATG
    GATATCATCT TGAAGGAGAG CTGTGGCATT TTCCAGGGCA TCAGCTCTCT
    TATTGATGTT GGTGGTGGCC ATGGCGCTGC AGCTGCAGCC ATAGCAACGG
    CATTCCCAAA CATCAAGTGC ACTGTGCTGG ATCTGCCTCA TATTGTTGCT
    GAGGCTCCCG CCACTCATAG CAACATCCAG TTTATAGGTG GTGACCTTTT
    CAAGTTCATT CCAGCAGCCG ATGTTGTTCT ACTTAAGTGT CTTTTGCACT
    GTTGGCAAGA TGATGATTGT GTCAAGATTC TGCGACTATG CAAAGAGGCA
    ATCCCGGCAA GAGATGCTGG GGGAAAGGTG ATAATTATTG AGGTGGTTGT
    CGGGATTGGA TCCGAGGAAA TTGTTCCTAA GGAGATGCAA CTTTTGTTTG
    ATGTTTTCAT GATGTACATC GATGGCATCG AGCGAGAGGA GTATGAATGG
    AAGAAGATTT TCTTAGAGGC TGGATTCAGT GACTACAAAA TCACCCCGGT
    GCTAGGTGCC CGATCAATCA TCGAGGTTTA CCCTTGATGC TTCTGAAGGT
    GTACATGTGC ATCTCTCCGT GGAACCTATT CTAGTTCAGA CAATTGAACT
    AAATACATAA CATGTTGGTT ATAAACATGT TTATGTTAGT CTTTTGATTT
    CCTTTCGTTC ATGAGTCAGT AGCCTTGAGG CGTGTGCATG TTCACACTGA
    GGCCATCGTT TTTTCGTTTT TCTGTTGTCG TATGAGCTAC AGTATGTGCT
    CTGTGGGATG GTACAACTTA TGTACGTCGT GGCTTGAGTC TTGGGCATAT
    TGGTAGCCCG TGATTTCCAT TTTTATTTTC ATCACAATAA GAGGAAGAGA
    AAACTGAAAA GCTGCAATGC AGTTCGCAGC GCC

    Gene models with high sequence identity

    1. AT4G35160.1 [+] show detail - O-methyltransferase family protein
      E-value: 7e-33; Score: 139.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR O-methyltransferase, COMT, eukaryota 1e-142
    superfamily S-adenosyl-L-methionine-dependent methyltrans 1.8e-72
    superfamily "Winged helix" DNA-binding domain 1.1e-31
    HMMPanther O-METHYLTRANSFERASE 6.9e-51
    Gene3D Winged helix-turn-helix transcription repressor DNA-binding 7.9e-30
    Gene3D no description 4.9e-67
    HMMPfam O-methyltransferase, family 2 2.6e-65
    HMMPfam Plant methyltransferase dimerisation 5.2e-10

    See the detailed result >

    AT4G35160.1

    Model type
    Protein coding
    Short Description
    O-methyltransferase family protein
    Computational Description
    O-methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, O-methyltransferase activity, protein dimerization activity; LOCATED IN: cytosol; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT4G35150.1); Has 3345 Blast hits to 3334 proteins in 568 species: Archae - 3; Bacteria - 935; Metazoa - 112; Fungi - 688; Plants - 1514; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR