K23341

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23341

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Original: K23341

Determination of introduced cDNA(s)

  • J013002O24 - Rice Full-length cDNAs - Original: J013002O24

    full reading [+] show sequence

    Nucleotide sequence: J013002O24 - full reading 
    GATTCCATTC CACTCGCCAA CCCGACACGT CTCTCATCTT CACGCAACGA 
    ACAGCAGCAG CAGCTCAAGC TAAGCTAAGC TAAAGTACTA CGTGTTCTTT 
    CGTCTTCGTC GGCGCCGGAG TTTGATTCGT CGGAGCTAGC TAGCAAGAGG 
    AAGAAGAAAA TGTTGGCCAT ATTCCAGAAG CAGGTGGCGC ACGCGCCGGC 
    GGAGCTGAAC AGCCCGCGGA GCAGCGCGGC GAAGCCCAAG AACCCCGACG 
    AGATCATCAG GGACTTCCAC GCCCTCCACC CCATCGAGGC CTTCTCCACC 
    TCCTTCGGCG GCGGCGCCGC CCTCGCCTGC GTCGCCGGCC ACGCCCGCAA 
    TGGCCTCTCT GGCTACGAGA GGATGTTCTG TGGGCTGGAT GACATCTACT 
    GCGTGTTCAT GGGGAGGCTG GACAACCTGA GCAGCCTGAT CCGGCAGTAC 
    GGGCTGTGCA GCCGCTCCAC CAACGAGGCG CTGCTCGTCA TCGAGGCCTA 
    CCGCACCCTC CGCGACCGCG GCCCCTACCC CGCCGACCAG GTCGTCAAGG 
    ATCTCTCCGG CTCCTTCGCC TTCGTCGTCT TCGACAACAA GTCCGGCGCC 
    GTCTTCGCCG CCCTGAGTAC GGATGGGGAG GTGCCGTTGT ATTGGGGGAT 
    CGCGGCGGAT GGGTCGGTGG TGATCTGCGA CGAGAGGGAG ATCGTGAAGG 
    GAGGGTGCGG CAAGTCGTAC GCGCCGTTCC CGGTGGGGTG CATGTTCCAC 
    AGCGAGGGGG GGCTCAAGAG CTTCGAGCAC CCGATGAACC GGCTGAAGGC 
    GATGCCGCGG GTGGACAGCG AGGGCGTCAT GTGCGGCGCC ACCTTCAAGG 
    TCGACACCTT CACCAAGATC AACTCCATGC CCCGCGTCGG CAGCGCCACC 
    AACTGGGCCG CCACCTGGGA CGACGCTGCC GCCTGATGAT GGCGCTCCGT 
    ACGCCGTCGT CTCGTCGCCG TGCGCCTGCC CTCGCCGCCG GCCTCCTCGC 
    CGTTTGCCGC CGCCGCTCAT CTCTTCCTCC TCTTCTTCCT CCTCTCTATA 
    TCCGATGTGC TTCTCCGTCC GAAGCATGCA GATTATTAGA GCGATATTTG 
    CAGCTAGCGT GGAAGCGCGC CAATCTATTT TTCTGCGGTG TTTTTACTTA 
    ATTTTCACCT CTTCTTTTTA AATTTTTATG TCCATCTTTG GGCTCTCGCC 
    TCTCGGCAAT GTATATTCTC GGTCGCGGGT GGCATGTCAT GGTACATACT 
    ATGAATGATG AATAAGAAAG AGTTTGCTTC ACTC

    Gene models with high sequence identity

    1. AT4G27450.1 [+] show detail - Aluminium induced protein with YGL and LRDR motifs
      E-value: 5e-88; Score: 322.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 4.1e-16
    HMMPfam DUF3700 5.5e-47
    HMMPfam DUF3711 1.5e-33
    superfamily N-terminal nucleophile aminohydrolases (Ntn h 4.3e-29
    HMMPanther ASPARAGINE SYNTHETASE 0.000017

    See the detailed result >

    AT4G27450.1

    Model type
    Protein coding
    Short Description
    Aluminium induced protein with YGL and LRDR motifs
    Computational Description
    Aluminium induced protein with YGL and LRDR motifs; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Aluminium induced protein with YGL and LRDR motifs (TAIR:AT3G15450.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR