K23341

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23341

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Original: K23341

Determination of introduced cDNA(s)

  • J013002O24 - Rice Full-length cDNAs - Original: J013002O24

    full reading [+] show sequence

    Nucleotide sequence: J013002O24 - full reading
    GATTCCATTC CACTCGCCAA CCCGACACGT CTCTCATCTT CACGCAACGA 
    ACAGCAGCAG CAGCTCAAGC TAAGCTAAGC TAAAGTACTA CGTGTTCTTT
    CGTCTTCGTC GGCGCCGGAG TTTGATTCGT CGGAGCTAGC TAGCAAGAGG
    AAGAAGAAAA TGTTGGCCAT ATTCCAGAAG CAGGTGGCGC ACGCGCCGGC
    GGAGCTGAAC AGCCCGCGGA GCAGCGCGGC GAAGCCCAAG AACCCCGACG
    AGATCATCAG GGACTTCCAC GCCCTCCACC CCATCGAGGC CTTCTCCACC
    TCCTTCGGCG GCGGCGCCGC CCTCGCCTGC GTCGCCGGCC ACGCCCGCAA
    TGGCCTCTCT GGCTACGAGA GGATGTTCTG TGGGCTGGAT GACATCTACT
    GCGTGTTCAT GGGGAGGCTG GACAACCTGA GCAGCCTGAT CCGGCAGTAC
    GGGCTGTGCA GCCGCTCCAC CAACGAGGCG CTGCTCGTCA TCGAGGCCTA
    CCGCACCCTC CGCGACCGCG GCCCCTACCC CGCCGACCAG GTCGTCAAGG
    ATCTCTCCGG CTCCTTCGCC TTCGTCGTCT TCGACAACAA GTCCGGCGCC
    GTCTTCGCCG CCCTGAGTAC GGATGGGGAG GTGCCGTTGT ATTGGGGGAT
    CGCGGCGGAT GGGTCGGTGG TGATCTGCGA CGAGAGGGAG ATCGTGAAGG
    GAGGGTGCGG CAAGTCGTAC GCGCCGTTCC CGGTGGGGTG CATGTTCCAC
    AGCGAGGGGG GGCTCAAGAG CTTCGAGCAC CCGATGAACC GGCTGAAGGC
    GATGCCGCGG GTGGACAGCG AGGGCGTCAT GTGCGGCGCC ACCTTCAAGG
    TCGACACCTT CACCAAGATC AACTCCATGC CCCGCGTCGG CAGCGCCACC
    AACTGGGCCG CCACCTGGGA CGACGCTGCC GCCTGATGAT GGCGCTCCGT
    ACGCCGTCGT CTCGTCGCCG TGCGCCTGCC CTCGCCGCCG GCCTCCTCGC
    CGTTTGCCGC CGCCGCTCAT CTCTTCCTCC TCTTCTTCCT CCTCTCTATA
    TCCGATGTGC TTCTCCGTCC GAAGCATGCA GATTATTAGA GCGATATTTG
    CAGCTAGCGT GGAAGCGCGC CAATCTATTT TTCTGCGGTG TTTTTACTTA
    ATTTTCACCT CTTCTTTTTA AATTTTTATG TCCATCTTTG GGCTCTCGCC
    TCTCGGCAAT GTATATTCTC GGTCGCGGGT GGCATGTCAT GGTACATACT
    ATGAATGATG AATAAGAAAG AGTTTGCTTC ACTC

    Gene models with high sequence identity

    1. AT4G27450.1 [+] show detail - Aluminium induced protein with YGL and LRDR motifs
      E-value: 5e-88; Score: 322.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 4.1e-16
    HMMPfam DUF3700 5.5e-47
    HMMPfam DUF3711 1.5e-33
    superfamily N-terminal nucleophile aminohydrolases (Ntn h 4.3e-29
    HMMPanther ASPARAGINE SYNTHETASE 1.7e-05

    See the detailed result >

    AT4G27450.1

    Model type
    Protein coding
    Short Description
    Aluminium induced protein with YGL and LRDR motifs
    Computational Description
    Aluminium induced protein with YGL and LRDR motifs; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Aluminium induced protein with YGL and LRDR motifs (TAIR:AT3G15450.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR