K23344

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23344

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23344

Determination of introduced cDNA(s)

  • J013092D16 - Rice Full-length cDNAs - Original: J013092D16

    full reading [+] show sequence

    Nucleotide sequence: J013092D16 - full reading 
    GGTGTAGTTG ATCCGAAGTT GGGAGTGGAG ATGCGAGCGG CAGCAGGAGG 
    CCGCGGCTTC CTCCTCCACC CGCGGCCGCC ATGGCGAGCT CCCGCGACTC 
    CTCCTTGTCC TCCTCCTCCA GCCACCGCCA CCGCGCTCGC GAGGCGGCTT 
    CACCACCGAC GCCTACCTGA AGGTATTTTG TCCACCCTGG AACGAGGTGT 
    TTCTACACTG CATTTGCGTT GTTGGGTTCA CTGTGCAACA TGTGGTGTTA 
    CGTTACATGA CATATCACAG GCAGAACCTG TGAATGGAGC AAAGTCCGAC 
    CTTGTTCAAA AGCATGAGAA GGTAGGTGCA TTTCAGAGAA TACCAATGGT 
    GATGCCTGCA ACTGATATAC TTATGTCAGC ACAAAGAAAA TCAAGAAATG 
    TACCACCTAC AAAGGGTATA GCAAATATTG CTAAACGTGA AAGGAACAAA 
    GGGGCAAAAC AACTTGATGC CTTAATGAAA GAAATTTCAG TACCTCTGAG 
    AACATATACA GAAAACTTCC CTAAGAGGAG GGATCTTCAC CCCTATGAGA 
    GATCTCTCAT TGAGTTGACT TTTGGGGAGG GATATTACGA GAAGGTAATA 
    GCACGAGTGG ATGCTCTCAG GAAAAAGATT AATTCTGTCG GGAAGCAACA 
    TGCTTCTGTC TGTGCTAAGT CATTAACGAA GCGTGAAGCA GGGGAGCGAC 
    TCAGTGAGGG GCGGAAGAAA CTTGAGGAAG CTTTCGAGCA TGGGAAGTGG 
    GTAATTGATG ATTTAGTAAA CATTGCAAAG ACTTTGCGTT CTATGCCAGT 
    TGTTGATCCA CATATACCTA CACTTTGTCT TGTTGGATCA CCCAATGTGG 
    GGAAGTCATC ATTAGTTCGC ATATTATCGT CTGGAAAACC TGAGGTCTGC 
    AGCTACCCTT TCACAACAAG AGGTATTCTA ATGGGACACA TTGTATCCAA 
    TCATGAACGT TTTCAGGTTA CTGATACCCC AGGACTTCTT ACAAGAGATG 
    ATGATGAAAG GAATAACATT GAGAAATTGA CCCTTGCTGT CCTTTCTCAT 
    CTACCAATTG CTGTCCTGTA TGTTCATGAT TTATCTGAGG ACTGCGGGAC 
    CTCAGTGGCC GATCAGTACA TCACATACAA GCATATAAAG GAAAGATTCG 
    GTGATCGCTT GTGGCTTGAT GTTATATCCA AATCTGATCT TTTGGACAAG 
    AAAACATCCT CAGAATTTGA TGATGCTGAT GATGAAGTAG GGAGATACAG 
    AAGATTCGGG CCAGAATGTG CCATCCGAGT ATCTGTGCAG GGCCAAGTTG 
    GAGTAAAAGA GCTAAAAGAG AAGGTGCATC AGCTACTAAC CTCTCAGATG 
    TCTCGGATCA AAGCTGGCAC AATCTATCAG GAAACCCAGA GAACGGATGA 
    TAATGCTCCC GGGCAAACTT AGATTATGGA AAGGTTATGT ACACATTTAT 
    GTAAACCTTT TAACTCGTGC TGACAGTCGG TGCATCTAAT GTAGTAGTAC 
    CTGGAATTTT GTACGGAAGG AGAAAATTTT GGGCCTGTTC ACTTTGATGA 
    AAAAAAAAAC CTTACTAAAT TTTGGCATTG CCAAATTTTG GTATAGTTGC 
    CAAAATTTTG GCGAACTTGT CAAAATTTTG ACATGATTTC TTATATAGTT 
    ACCAAAATTT GGTAGC

    Gene models with high sequence identity

    1. AT1G80770.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
      E-value: 2e-124; Score: 442.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan GTP1/OBG 1.6e-09
    FPrintScan GTP1/OBG 1.6e-09
    FPrintScan GTP1/OBG 1.6e-09
    Gene3D no description 9e-22
    superfamily P-loop containing nucleoside triphosphate hyd 2.6e-28
    HMMPanther NUCLEOLAR GTP-BINDING PROTEIN 1 3e-71
    HMMPanther DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN 3e-71
    HMMPfam Nucleolar GTP-binding 1 5.9e-18

    See the detailed result >

    AT1G80770.1

    Model type
    Protein coding
    Short Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Computational Description
    pigment defective 318 (PDE318); FUNCTIONS IN: ferrous iron transmembrane transporter activity, GTP binding; INVOLVED IN: ferrous iron transport; LOCATED IN: integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), Nucleolar GTP-binding 1 (InterPro:IPR010674), Ferrous iron transport protein B, N-terminal (InterPro:IPR011619); BEST Arabidopsis thaliana protein match is: Nucleolar GTP-binding protein (TAIR:AT1G10300.1); Has 11067 Blast hits to 11052 proteins in 2859 species: Archae - 320; Bacteria - 7505; Metazoa - 379; Fungi - 348; Plants - 242; Viruses - 0; Other Eukaryotes - 2273 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR