K23401

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23401

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23401

Determination of introduced cDNA(s)

J013127C12 - Rice Full-length cDNAs - Original: J013127C12

full reading [+] show sequence

GATCTGATAT TACTCATCCA TTCCATCCGC GACAGGGAGC GTAGCATGCA 
GGTGCAGATG CAGATGCAGC AGGCTACCAC CGTTCTCAGC AGCAGCAGCA 
ACCGGCCTTG GACGCTGTGG TGCCATCCTG TCCCAGTAGT CTCCTCCCCA 
TCCCACGCCA AAAATAAGAA GCATTGCCTC CGACTCCGAG CAGGCATGGC 
CATGGCCTCC TCCGAGCTTC CTGACCTGAG CGCAATACAA CGCGTGGTGC 
TGGACATCGA GGGCACCACG ACGCCCATCT CCTTCGTGGC GGACGTGCTC 
TTCCCCTACG CGCGCGACAA TGTCCGCCGC CACCTGGCCG CCACTTACGG 
CAGCAGCGAG GAGACGCGCG CTGACGTGGC CCTGCTGCGG GCGCAGGTGG 
AGGAGGACCT CGCGCAGGGC GTCGACGGTG CCGTGGCGGT TCCGCCGGAT 
GCGGAAGGGG AAGGGGAAGG CGCCGTGGTG GAGGCCCTGG CGGCGAACGT 
GGAGAGCATG ATTCGCGCGG ACAGGAAGGT GACGGCGCTG AAGCAGCTGC 
AGGGGCGCAT CTGGCGGCGG GGCTTCGACA GCGGCGAGCT GCGGAGCGAG 
GTGTACGACG ACGCGGCGGA CGCGCTGCGG CGGTGGCGTG CCAAGGCCTA 
CATCTACTCC AGCGGAAGCA GGGAGGCCCA GCGCCTCATC TTCGCCAACA 
CCGCTGCACA CGGCGATCTC CGCGACCACC TCTGCGGATT CTTCGACACC 
ACAATAGGGG CCAAGCGCGA GGTTAGCAGC TACTACGAGA TCTGGCAGAC 
TCTGGGCACG GACCGCCCCT CCCAGATCCT CTTCTTGACA GACGTCTACC 
AAGAAGCCGC TGCAGCAAAG ACTGCAGGCC TTGAGGTGAT AATATCTGTC 
AGGCCTGGAA ACGCACCCCT CCCTGATAAT CATGGTTTTC ACACAATCAC 
ATCATTCGCT GAAATCTCCA TCTGAACCTA GCCAGAAATG TCTTGTACTA 
TACAATCTGA TCCGAACAAT ATTCTACCGT ACGCTAGCAG CACAGTTAGC 
AAATGGTTTG GTTAGGTTTA AGGCAAGACA ATCTGGGGTG TAAATAAATG 
TGTAATAGTC CCAATCAAGC TAATACTATC ATGCTCCCAT TCCATCCAAA 
CCTGGAACAA CAATTTCAGA TGCATATACT ACTACTTTAC ATTTGTTCCT 
TTTCCT

Gene models with high sequence identity

AT5G53850.2 [+] show detail - haloacid dehalogenase-like hydrolase family protein
E-value: 3e-70; Score: 262.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	2,3-diketo-5-methylthio-1-phosphopentane phosphatase	3.4e-84
superfamily	HAD-like	3.4e-18
HMMTigr	2,3-diketo-5-methylthio-1-phosphopentane phosphatase	2.6e-70

See the detailed result >

AT5G53850.2

Model type: Protein coding
Short Description: haloacid dehalogenase-like hydrolase family protein
Computational Description: haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: L-methionine salvage from methylthioadenosine, L-methionine salvage, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), 2,3-diketo-5-methylthio-1-phosphopentane phosphatase (InterPro:IPR010041), Class II aldolase/adducin, N-terminal (InterPro:IPR001303), HAD-superfamily hydrolase, subfamily IA, variant 1 (InterPro:IPR006439), Methylthioribulose-1-phosphate dehydratase (InterPro:IPR017714); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR