K23409

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23409

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23409

Determination of introduced cDNA(s)

J033027A21 - Rice Full-length cDNAs - Original: J033027A21

full reading [+] show sequence

GGCGTCACTC TCCTCCCCCT CGTATCGCTC GGGAGCGGAG GTCTCCTCGC 
CCCTAGAGCG CCGCCGCCGC CACCGCCGCG GCCGCCGCGG CGGGGACTTG 
CCGGTGCCAA GTCCACACGC CATCGTCGCT CGCACCCTTC CCGCGCAGGG 
ATTTGTTCAC GATGGCCCGC TTGTATGTTG GCAACTTGGA TCCCCGAGTG 
ACTTCCGGGG AACTTGAAGA TGAGTTTCGT GTGTTTGGAG TTCTGCGAAG 
TGTCTGGGTT GCCCGTAAAC CACCTGGTTT TGCATTTATC GATTTTGATG 
ACAAGAGGGA TGCTGAGGAT GCACTCCGTG ATTTAGATGG CAAGAATGGA 
TGGAGAGTTG AGCTCTCACG GAACTCAAGT AGCCGCGGAG GTCGTGATCG 
ACATGGTGGG TCTGAGATGA AGTGCTATGA GTGTGGTGAA ACTGGGCACT 
TTGCTCGTGA ATGTCGTTTG CGTATTGGTC CTGGAGGTCT GGGTAGTGGA 
AAGCGTCGTA GCAGGAGTCG CAGCCGCAGT CGCAGCCCTC AATACCGCAA 
GAGCCCGACC TATGGTAGAA GAAGCTACAG TCCTCGTGAT CGCTCTCCAA 
GGCGCCGCAG TGTTTCACCA GTTCGTGGGC GCAGCTACAG CAGGTCACCA 
CGTGGCCGAG GTGGTTCTCC TTATGCTGAT GGAAGAGATG GTGGCAGGTA 
CCGCCGTAGC AGGAGCTAGA CCCTGATGCC TGTGCTTGAC CGTCTGCTCT 
TTGGCTTGCA TGCCATGAAT GCTTTAAGAC TGGCATCAAC TGATTGACTT 
CAATTAAGAG GGATCATTCT GCTTAAGCGA CTCAGCCAAC TACCGGCTCT 
GTCTGCATGG TTTTGTTCTG CACTCTTCAT TCCTCGAGCG TGTTGCCTGC 
TTCATGTGAA GTTGCAAGCA AAAGAGAATC TTCCATTGTT TCCTGCCTAT 
GATGCCTCGT TGTGGTTGGC ACTCTTCGTT GAAGATGCTG CATCGTCACA 
AATTACCTGT AATTCAGCGA CAAAAGGAAT TTGCTGGGTT GGCTTCCGCA 
AGAGGCAGAG ACTACCTTTT AAGCGGTTCC ACCGACTCCA CCCCTTGGCT 
TTATTCTTTC TGGTTTTTCC TTCACTCTGC GCATCTGTCG GCCTTCTTCC 
TGCACTGCAT CGCCATAATA GTAGCCTCTA TATATGGGAC CTTCAGATGA 
AATATTCTCG TTCTGCATTC TTCCTACCGG CGGCCATTAG ACAAAATATG 
TTTTTTTTTC TTTCTGTTTA TGTGGTTTAT TACTTTTATT TGTATCTCAA 
CCGTTCAGAA CAAGTGGCCA GCACTTCATG TCTCAATTGT TGTGAATTAC 
TCTTTTGACC TAGAGCTAAT AACAGCCTCA GTTCATATCC

Gene models with high sequence identity

AT4G31580.2 [+] show detail - serine/arginine-rich 22
E-value: 2e-33; Score: 140.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	ARGININE/SERINE-RICH SPLICING FACTOR	2.6e-29
ProfileScan	RNA recognition motif, RNP-1	15.596
ProfileScan	Zinc finger, CCHC-type	10.823
HMMSmart	RNA recognition motif, RNP-1	2.7e-16
HMMSmart	Zinc finger, CCHC-type	0.00011
Gene3D	Nucleotide-binding, alpha-beta plait	6.4e-13
HMMPfam	RNA recognition motif, RNP-1	3.4e-15
HMMPfam	Zinc finger, CCHC-type	3.5e-07
superfamily	RNA-binding domain, RBD	1.6e-15

See the detailed result >

AT4G31580.2

Model type: Protein coding
Short Description: serine/arginine-rich 22
Curator Summary: Encodes a Serine/arginine-rich (SR) protein RSZp22. SR proteins are splicing regulators that share a modular structure consisting of one or two N-terminal RNA recognition motif domains and a C-terminal RS-rich domain. RSZp22 is located in the nucleolus. It is a nucleocytoplasmic shuttling protein and an interacting partner to the Arabidopsis U1-70K.
Computational Description: serine/arginine-rich 22 (SRZ-22); FUNCTIONS IN: protein binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck, nucleolus, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: RNA recognition motif and CCHC-type zinc finger domains containing protein (TAIR:AT2G24590.1); Has 12597 Blast hits to 10987 proteins in 687 species: Archae - 4; Bacteria - 845; Metazoa - 6508; Fungi - 1364; Plants - 2624; Viruses - 137; Other Eukaryotes - 1115 (source: NCBI BLink).
Link: InterPro Scan - TAIR