K23411

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23411

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23411

Determination of introduced cDNA(s)

  • J023048M10 - Rice Full-length cDNAs - Original: J023048M10

    full reading [+] show sequence

    Nucleotide sequence: J023048M10 - full reading 
    GGTTGATTCT GAATAATTTG CAGCTGCGAA GCGAGGTGGA ATCGGAAGGA 
    GGCGCATTCC ATGGCTGGAA CGAGGGTGCC ATCGCCTTCT CGCCGACGTA 
    CAAGTACTAC CCCAACTCCG ACACCTACTA CGGCTGCGCC TCCCATGGCA 
    GGAAAGGCGA GAAGCGGCGC GCGCCGGCGT GGTGTGACCG GATACTATGG 
    CGCGGCGCCG GGCTGAAGCA GAAGCGGTAC GACCGGTGCG AGTCGCGGCT 
    GTCGGACCAC CGGCCGGTGA GGGCGCTGTT CGAGGTGGAG GTGGGGGCGC 
    CGAGGAGGAA CCTCAACTCG CTGCGGAGCT TCTTCCTGTC GGAGAGGTTC 
    GACGGCGGGA GGAGCGCCGC CGCCGACCTG CTCCGGGAGG ATGGCACCGC 
    CAGCAGCGCG AGATTCGGCG ACACCATTTG ATGCTTTCTT GCAGATAAAC 
    AGAGAGAGGA TCAGTGGAAG AAGAGGATGA GGGATCTAGA GAAAGAGAAT 
    CAGAGAGACA GAGAGGGTGT AATGTAAATT GATTATTCTG TCCTGAGTAA 
    ATGTTCGTAT ATAATCTGCA GTATAGCTAG GATACAGACT GTTCCTGACT 
    TCCTGTAACT ATACATATGT ACTCTTCATG ATCAGAAATT CACAATACCA 
    GATCAATTTG TCT

    Gene models with high sequence identity

    1. AT2G01900.1 [+] show detail - DNAse I-like superfamily protein
      E-value: 3e-33; Score: 138.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Endonuclease/exonuclease/phosphatase 2e-16
    Gene3D no description 3.1e-26
    superfamily Endonuclease/exonuclease/phosphatase 5.3e-27
    HMMPanther TYPE I INOSITOL POLYPHOSPHATE 5-PHOSPHATASE, 3.8e-43
    HMMPanther INOSITOL 5-PHOSPHATASE 3.8e-43

    See the detailed result >

    AT2G01900.1

    Model type
    Protein coding
    Short Description
    DNAse I-like superfamily protein
    Computational Description
    DNAse I-like superfamily protein; FUNCTIONS IN: hydrolase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: hypocotyl, sepal, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT2G37440.1); Has 2320 Blast hits to 2027 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 735; Fungi - 544; Plants - 769; Viruses - 0; Other Eukaryotes - 272 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR