K23415

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23415

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23415

Determination of introduced cDNA(s)

  • J023077E11 - Rice Full-length cDNAs - Original: J023077E11

    full reading [+] show sequence

    Nucleotide sequence: J023077E11 - full reading 
    GTCCACTCCT TCTAGAGGAA AAGGATCGAT TTTTTTTCTT CCCCAATTTC 
    TTCCTGGTGC TCACCTCCTC CTCCCCCGGG ATCTTCCAGA AGCTTCCAGA 
    ACTGACCTTG GTGCGGGCGA GATCCAAGGA GGAGGGTTTC CTGCCATGGT 
    GAAGGATACC GCGTACTACG ACACCCTGGG GGTCAGCGTG GACGCCTCCC 
    CCGCCGAGAT CAAGAAGGCC TATTACCTCA AGGCGAAGCA GGTGCATCCG 
    GACAAGAATC CTGGGAACCC CGATGCGGCG CAGAAATTTC AGGAACTCGG 
    AGAGGCATAC CAAGTTTTAA GCGATCCTTC AAAAAGGGAG GCTTATGATA 
    AGCATGGAAA GGAGGGGCTT CCTCAGGATA ACATGGTGGA TCCTGCTGCT 
    GTCTTTGGGA TGCTTTTTGG AAGTGACTAT TTTGAAGATT ATGTTGGACA 
    GCTTGCACTG GCATCCATAG CATCAGTGGA AGTCGAGGAA AACTTAAACA 
    GTCAAGAAGC AAGAGGGAAG GTTCAAGAGA AAATTAAAGA GTTACAAAAA 
    GAAAGAGAAC AGAAGCTTAT TCAGAGCCTA AAAGATCGAC TTCAACCATT 
    TGTGGATGAG AGAAAGGATG AATTTGTTAA CTGGGCAAAT GGGGAAGCTC 
    AGCGGTTATC CCATGCAGCT TTTGGCGAGG CTATGCTCAC CACTATTGGC 
    TATATTTATG TGCGACAAGC AGCGAGAGAA CTTGGAAAGA GTAAGTTGTA 
    TATGGGTGTA CCATTCATAG CTGAGTGGGT CAGAGACAAG GGCCACTGCA 
    TTAAATCACA GGTTAATGCC GCTTCAGGCG CTATCGCTCT GATGCAGCTA 
    CAAGAAGGGA TGAAAAAGAT GGAGGAAAGT GACAATAAGG AGGACCAGAT 
    TATGAAGAGT TTCGAGGAGA AAAAAGATGC CATGCTTAGT TACCTATGGA 
    AAATTAATGT GGTTGATATT GAGTCAACAC TTACACATGT TTGCCAAGCA 
    GTTTTGAAAG ACGCCAGTGT CCCAAAAGAT GTTCTGAAGT TACGAGCAAG 
    AGCATTGAAA AAGCTTGGGA CGATATTCCA GGGTGCGAAG TCTCTGTACC 
    ATCGTGAAAA CAGCCTACAG GTGGAAACCA GCCCACGGCA GGGAGCAGCA 
    ACATCGAACT GAAGACTGCA AAAGTACAAA AAGGAAAAAA AAAAGTACAC 
    CTGACAGACG CAATTTCTGG TTTTTTGGAG GTGTCGTCTC TCGTGTCCGT 
    TTATTCATTT TTGTAAGATT TTAGACGACG CGTATCGTTC TGGATAAAAT 
    TTGCTGTTTG ATTTGGTCTC CGTTTTCTTT GTAAAAATGG TGATGCTGTC 
    GTGAGCTCTG AACACGAAGA TTTTGTTGGT GCTCTGCAAC CTGCATATTA 
    CTAGCTTGGG CTATCTCGTT GTAAGATTTG CACC

    Gene models with high sequence identity

    1. AT4G39150.2 [+] show detail - DNAJ heat shock N-terminal domain-containing protein
      E-value: 4e-117; Score: 418.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Heat shock protein DnaJ, N-terminal 5.2e-29
    PatternScan Heat shock protein DnaJ, conserved site 0
    HMMPfam Heat shock protein DnaJ, N-terminal 1.1e-25
    HMMPanther DNAJ-RELATED 3.7e-155
    HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 3.7e-155
    FPrintScan Heat shock protein DnaJ 5e-12
    FPrintScan Heat shock protein DnaJ 5e-12
    superfamily Heat shock protein DnaJ, N-terminal 7.2e-29
    ProfileScan Heat shock protein DnaJ, N-terminal 21.209
    Coil coiled-coil 0
    Gene3D Heat shock protein DnaJ, N-terminal 5e-24

    See the detailed result >

    AT4G39150.2

    Model type
    Protein coding
    Short Description
    DNAJ heat shock N-terminal domain-containing protein
    Computational Description
    DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G21510.1).
    Link
    InterPro Scan - TAIR