K23416

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23416

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23416

Determination of introduced cDNA(s)

  • J023080E06 - Rice Full-length cDNAs - Original: J023080E06

    full reading [+] show sequence

    Nucleotide sequence: J023080E06 - full reading
    GCCTTTCACC GTCACCGCCT CATTCTTTCC GATCCTCCGC GCCGCGCTGC 
    TCGGTGCTCC GCCGCCGCCG CCGCCGCCGC CGCTCACCGC AACGAGCATA
    CTACCGCCTC TCTTCCTCGT CGTGCCCTAG TGGGAACTGG GAACCCCCGC
    CGCGCCCAGC TGGAGGTAGA AAATCTCTCT TGGAAGATGG TTCAACTCTT
    TTTTCAAGGG ACCACAGATG GTGGTAGTGT TGATACAGAT GCTGTAAAAG
    CAAGGCGATC TCTTCTTGGC AAGGTGGAGC CTATAATCAG GTCGGTTATA
    AAGTCTGGAG GTGGGTATGA GGCTCGGATG TGGCTCTGCA GTACGGTCTC
    ATCCATTCAT TTGCTCGACC CATATGGCCA GCGGGACCTG TTTCTCAATC
    TCTTGGGGAT GAAAAATTCC AAACGGGATG TCGCTGCCCG CTTGCTGCGG
    ATGATTTTTG ACAAAAAGCC CAAAAAAGCA GGTTCTATTA TAGCAAAGAA
    ATGCCAGATG CTAGAGGACT TCTTCCAAGG GAATCCAAAG CAGATAATGC
    AGTGGTTTGG TCACTTTGCG GTTACTGGAG TTGACACATA AGAAGGGTGC
    TAGGGCACTT TCTCAATTTG CATTTGTGAA TCGTGATATT TGTTGGGAAG
    AGCTTGAGTG GAAAGGCAAG CATGGGCAGT CTCCTGCTGT TGTTGCTACT
    AAGCCCCATT ATTTTCGTGA TCTCGATGTT CTGCGGACTG TGGAAAATTT
    CCTGGAGTAT GTCCCAGACT TCTGGTCTTC TGAAGAGCTT GCTGATTCCG
    TCAAAGACGG TGAAATACTG CAAATTGACA CAGAATATTT TGTAGATCAA
    TTCGTTTACT TGATGTATGA GGAGAATTCC AGAGATGCAT GGCAGTTAGT
    TGATGAATTT TTGATGGACG AGCAGTTTTC TTCTCTTTCT CAACATCTTC
    TTATTCATTT AGATGAACAA AGGCTTCTTA ATTTCTTGAG AGCTTTGGGG
    AAGTTGATCA AGCTGAATTC ACAGTGCAAG GAAATGGTGT TCCCATGCTG
    TTGGCTTGAG GTTCTTTTGT CAGCACACAG TGATCACATA TCTCTTGATG
    AACTTGTGCT ATTGAACTGT GTCATTTCTA AGGGCAGACA ACTTTGGCGC
    CTCATGAATG ATGAAGAACA AGAGGAAGAA CAAGGACAGA TGCAAGAGCT
    TCTGAAGAGC ACTAATCAAT TGACTGATGC TGATCATTTT GCTCTCATGA
    AGGGATTTGT GGATACAGAA CTTCCGGACG CACTTAAGTG GATAGGCATC
    CAGTCCTGGC TAGTTTTCTG TGAATTGTCA AAAGGGTGCA AATCAGCTGA
    TTCTTGTGAG CATCTGTTCA CTTGTAACAG AATAGAATTT CGCAAGGCTG
    ATGATTACCC ATTGGTCCAA AATGATGGGA ACTCAATTGC ACTAGACAGT
    GATGATGAGG ATCTCATAAG AGGTAGCCAT AAAAGGAGAA AGAGAGATCG
    GAAGAGAAAG CGACGGAGAT ATGATTCTGA CGAGGACGAT CTTGATCAGC
    TGCTTGAACT TGGTACCTCC AATAGGAGGG GCATTGAATC GCACCATGGA
    TGTTGGTATC TTTCAACTGA TGGCTTTTCT GCTTCATGGG ACATTGCAGA
    CATACCAGAT CACCTTTCCT CTCATTATCT AAAAACATGG CTAAAGTTTG
    CTTGCTTTAG ATGATCCTCA CAACATGAGT TCAACAACCC ACCAGTTTTC
    GGGTGAATTC ATGGGGTCAT GGAGATGTAT GTACAGGCTT CGCTCTGTTT
    TCCAACCTCA GATGCGCATC TTTAGGCCAT GAATTCTGAG AATTCATGCA
    TTTCTGGACG TGCTAGCCGC TGCTACATGA CCAAAGTACC GTGCTGGTTG
    ATTCCATTGA AAAATTACAG GCTAGGACAC TGAATTGGCA GGTTTCACTG
    GAAAGCGGAA AGTGAAAATA CATCTGAATG TTGTAAGACT TGACTAGAGC
    TGTTAAAAGT TGTATGCCCC GGTCTGCGGG CCTTACCGCC TTATGCTGTA
    GTTCGCAGCT GGTGACTTAA GAATTTTGAT CGACCTTTTT CTACATGAAA
    ATTGGTTGCT GTTTGTGCC

    Gene models with high sequence identity

    1. AT5G48340.1 [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; M...
      E-value: 2e-100; Score: 91.70

     

    InterPro Scan Digest

    See the detailed result >

    AT5G48340.1

    Model type
    Protein coding
    Computational Description
    unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR