K23423

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23423

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23423

Determination of introduced cDNA(s)

  • J013154J21 - Rice Full-length cDNAs - Original: J013154J21

    full reading [+] show sequence

    Nucleotide sequence: J013154J21 - full reading 
    GATCATCGTC AGGTCAGGCA CTTCACCAAC CCTCTGCCTC CCTTCCGCCG 
    CCCTCCGCCG CCGCATGCAA GCCATCCTCG CCGCTGCCAT GGCCGCCCAG 
    ACCCTCTTGT TCTCCGCCAC CGCCCCTCCC GCCTCCCTTT TCCAGTCCCC 
    TTCCTCTGCC CGCCCTTTCC ACTCGCTCCG CCTCGCCGCC GGCCCCGCGG 
    GCGCCGCCGC TGCCAGGGCG CTCGTCGTCG CCGACGCCAC CAAGAAGGCC 
    GTCGCCGTGC TCAAGGGCAC CTCCCAGGTT GAGGGAGTCG TCACCCTCAC 
    CCAGGATGAC CAAGGTCCTA CAACAGTGAA TGTCCGTGTG ACGGGACTTA 
    CTCCTGGACT TCACGGCTTC CACCTCCACG AGTTTGGCGA TACTACGAAT 
    GGGTGCATAT CAACAGGACC ACATTTTAAC CCAAACAATT TGACGCACGG 
    TGCACCAGAA GATGAAGTCC GTCATGCGGG TGACCTGGGA AACATTGTTG 
    CCAATGCTGA AGGTGTAGCT GAGGCAACCA TTGTTGATAA GCAGATTCCT 
    CTGAGTGGCC CAAATTCTGT TGTTGGGAGA GCATTCGTTG TTCATGAGCT 
    TGAAGATGAT TTGGGGAAGG GTGGCCATGA GCTTAGTCTC AGTACTGGAA 
    ATGCTGGTGG GCGACTTGCA TGCGGTGTTG TTGGGCTGAC CCCGTTGTAG 
    GTCGCTGCAA GTTGCAGCTG AAGTGTAAGT ATCGCATCCA TGTCACCCTT 
    TTTGTCATCT TCGAGCCTGA GGCAGTCGTT CTTGTATCAC ATGGATTTCG 
    CAACATGGAT GCTTAATAGT ATCTGTTGAT CGTTCGTCTC ACAGTAATAA 
    AATTTAGTTG AGC

    Gene models with high sequence identity

    1. AT2G28190.1 [+] show detail - copper/zinc superoxide dismutase 2
      E-value: 7e-75; Score: 277.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Superoxide dismutase, copper/zinc binding 7.4e-59
    FPrintScan Superoxide dismutase, copper/zinc binding 9.4e-46
    FPrintScan Superoxide dismutase, copper/zinc binding 9.4e-46
    FPrintScan Superoxide dismutase, copper/zinc binding 9.4e-46
    FPrintScan Superoxide dismutase, copper/zinc binding 9.4e-46
    Gene3D Superoxide dismutase, copper/zinc binding 5.6e-56
    HMMPanther SUPEROXIDE DISMUTASE [CU-ZN] 5e-75
    HMMPanther Superoxide dismutase, copper/zinc binding 5e-75
    HMMPfam Superoxide dismutase, copper/zinc binding 9.3e-49
    PatternScan Superoxide dismutase, copper/zinc, binding site 0
    PatternScan Superoxide dismutase, copper/zinc, binding site 0

    See the detailed result >

    AT2G28190.1

    Model type
    Protein coding
    Short Description
    copper/zinc superoxide dismutase 2
    Curator Summary
    Encodes a chloroplastic copper/zinc superoxide dismutase CSD2 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage.
    Computational Description
    copper/zinc superoxide dismutase 2 (CSD2); FUNCTIONS IN: superoxide dismutase activity; INVOLVED IN: in 6 processes; LOCATED IN: thylakoid, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Superoxide dismutase, copper/zinc, binding site (InterPro:IPR018152), Superoxide dismutase, copper/zinc binding (InterPro:IPR001424); BEST Arabidopsis thaliana protein match is: copper/zinc superoxide dismutase 1 (TAIR:AT1G08830.2); Has 4720 Blast hits to 4704 proteins in 1488 species: Archae - 6; Bacteria - 1989; Metazoa - 1257; Fungi - 323; Plants - 669; Viruses - 141; Other Eukaryotes - 335 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR