K23431

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23431

Determination of introduced cDNA(s)

J013147K06 - Rice Full-length cDNAs - Original: J013147K06

full reading [+] show sequence

GAGTCCAGCA ATTCCACTCC CCCACCACCG CCATCCTCCC CCCCGCCGCC 
TCCACCCGCC GGCGTCTACC TCCATCTCCT CCTCCATCAC CGCCACCGCC 
GCCATCCATA CGGGCTCTCC CGCTCGGCTC GGCTACTCCA CCACCGGCAA 
CGCTCCCCGT GCCGCATCCA TCCCCCCCCC TCCAAGCTTC CAGTCGCAGG 
AGAGAAGGCG GCCGCCGGAG TAGGCACACG CAACAAGCAG CTTCCAGTAG 
GTTTCCCTCA CCGGCGGCGG CGGCGGCGGA GGCGGCGAGA AGCCGGCCAT 
GGCGACGAAG CAGCAGGACG CTTCGACGTC CGGCGCGGCC ATGTCCATGA 
AGGAGTACCT CAAGAGGTAC CAATCCGACG ACGCGCAGGG CAAGGCCAAG 
AAGAAGAAGA AGAAGAAGCC CAAGCCCGCG GCCGCCGTGG GCGGAGGTGT 
GCTTATCGTC GACGAGGACC CCACGTGGCA CAAGCCCGTC CAGATCGAGG 
AGGAGCCCGC GTCGTCCGGG GATGAGAGAC CGTTGGTGGA CGAGGACATC 
GAGGTCAAGC GGATGCGCCG CCTGGAGGCG ATTCGCGCGG CGCGGCCGTA 
CAATGCTATC GCTGAGGACG GAAGCGGGTG GGTCACCGTG GCCGCCCCCG 
AGGACTCCGA TGGTGGTTTA ACCGGTCGCC GCCGCAGAAA TGACACGCCC 
TCACCGGAGC GCGGGGGTGC TGGAAGGAAG GATCTGTCTC CTCCGCGGCG 
GAGGCAGCGG CAGGATACGC CCTCGCCGGA CCCGAGAGAT GCTGCGGGTA 
AGGATCTGTC GCCGCCGAGG CAGAGGCGAA GGCGGCAAGA CACGCCGTCA 
CCAAAGGGTA GTGAGGTAGC TGGGGGGCAT GATGATTTGT CACCACCGCG 
GAAGTCTAGG CAGCAACGAG ACCCCTCTCC TCCACGCAGG CTCTCTCGCC 
ATGACTCCAA GGAATCCCAG GACATTTCAC CACCACGAAG GCGTACCAGG 
CATGACTCAG AGGAGCCACA GGACCTCTCT CCACCACGCC GGGAGGGGCG 
GCATGATTCT GAAGAACCCA AAGACCTCTT GCCACCATGG AGGCGCGTGA 
GGCATGATTC TGAGGAACCC AAAGACCTCT CGCCACCACG GAGGCGCACG 
AGACATGATT CAGAAGAGCC CGAAGACCTC TCTCCCCCAC GCAGACGGAC 
GCGGCACGAC TCTCATGAAC CCAAGGACAA ATTGCCACCA CTGAAAAGGC 
AGGCTTTGGG TGATGGGGAC ATTTCACCTC CAAGGAAGGG TAGGAAGGAA 
GTGGCTCCGA AGGAGGTGAG GAAAGCTGGG TTGATGACAG CAGAGGAAGT 
TAAAGAGGAC ATCAGGAAGA TTAAGGAGGA TGAGAGGCTC AAGTTTGCTG 
CACAGGATCC CTCAGTGATT GGGAAAGGGG CAAAAGCAGT ATTCCGAGAT 
AAACAAGGAA AACGAATAAG TGAAGAAGAT ATGAGGAAGG CAAAGGAAGA 
CACGAAACCA AAGGAAATAC ATATAGAATG GGGTAAAGGG TTGGTGCAGA 
AGCGAGAAGC TGAGGCTAGA TTACAGGAGC TTGAATCTGA AAAGAGTAAG 
CCATTTGCAC GGACAAGGGA TGATCCTGAG CTCGACACCA TGCTAAAAAA 
CAGAATCCGG TGGGGTGATC CTATGGCTCA TCTTGTCAAG AGGAATGATA 
CAGACCTCCT TCTGGAGGAC TTGGGAGATG ATGAAAAGAT GAAAGAATCT 
GGCTTCATTG TTCCCCAAAA TATACCTAGT CACAGCTGGC TGAAGCGTGG 
TGTAGATCCT CCTCCAAACC GCTACGGCAT AAAGCCTGGT CGTCATTGGG 
ACGGAGTGGA TCGCAGCAAT GGATTTGAGA AGGATATGTT TAAGCTGAAG 
AACGAGAAGC AAGCAACGGA GCAAGAGGCC TACCTTTGGT CTGTCGCAGA 
TATGTGAGCA TAGCTGTTCT TCAAAGAAGC CAAGGTAGCT TGTGTGCCTT 
GTTAAACGAA GTAGTATACT GTAAAATGCT TGGAAGGAAG GAAGCACGGC 
CTCTCGGCGT AGCACAGCGT GCTTGAAAAC TCAAATGTAG AATCAAACTT 
GTTGTGCATT GGTTGAAATC TTTTTGGCAT TTTTCTCTTT GCCACTCTTA 
AAAACATTTT GTAACATCGA TGAACATCTT TACTCGGAAT TAGAAGCTGA 
TCTTTT

Gene models with high sequence identity

AT1G31870.2 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
E-value: 3e-120; Score: 429.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
HMMPfam	Protein of unknown function DUF2050, pre-mRNA-splicing factor	4.2e-43

See the detailed result >

AT1G31870.2

Model type: Protein coding
Computational Description: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2050, pre-mRNA-splicing factor (InterPro:IPR018609); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR