K23436

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23436

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23436

Determination of introduced cDNA(s)

J033115N03 - Rice Full-length cDNAs - Original: J033115N03

full reading [+] show sequence

GGGGGTCCGA GAGAGAGAGA AACAACACCA CCACCACCAT CACCAACGAC 
ACCGAGACGG AAGGAAGAAG GAGAAGAAGG CGAGAGAGAG AGTAGTTCAC 
TTCCCTCCTC TCCTCTCCCT CTCTTCCCAC TCTCACGTCT CCTCTCTTCC 
CCTCCGCGAA GCAACGGGGG GCGAGGCGAC GGCAGCGGAG GAGGAGGAGG 
AGGnGGCGGC GGCAGCCGAA CCCCCACAAA AACGCCGCCC CTTnAACTTC 
CTTCCTTGCC TTGCACAGCC TCATCCTCGA TCCGTCGCGC GTTCGTCGGG 
CGATATCCCT CCTCCTCCTC CTCCTCCTCC TCCTCCTCCT CCGGTTTCCC 
CCGCGTGCGA GATTGAGCCT GGAAGCCCAT TCAGCGGCGG GGTTGGGGCG 
GCAGGCGGCT GTGAGGTTCT TGATTTGATC TGTGGTTGTT GTTGAGGTTG 
TGGTTGGGCG CCATGGCGGC GGCGGGAGGG CTGGAGCAGT GGCAGAAGGA 
CGGGTTCTTC AGGCCGCCGA GGAGGTGCAG GAGTCGGCGG ACTTGATGGA 
ATCTATTTAT AGAACTTGGA TGCGGGAACG CGATAGCGGA GCTAATTTAG 
AGGAGCTGAG CGATTTGCAA AGGGAGCTGA AGACAGCATT AGGAACTGCA 
AAGTGGCAGT TGGAGCAGTT TGAGAGAGCT ATAAGCATGA GCAATGATAA 
GTATTCTTTG GAAGAGGGTA CATTGGCCAG GCGTCGGCAG TTCGTTGTAG 
CAATGGAGGA CCAGATTTCT CAAGTAGAGA AACAAATAAA TGATTACTCG 
ATTGACAATG ATAGGCGAGG GCTCAACTGG GTAAAGTTAG ATGATGAGGA 
ACGAGATGAT CTTGTGGCTT TCCTTTCAGC ACCTGCACAG TTATCTCAAG 
ATACAAAGAA AAGAGACAAC ACTTACCATA GTCCATCAAA ACAAAAGAAT 
GCGTTGATTG GCGCGAATGA TCCCAGGGAC ATGGCTGCAA TCAGTAAAGA 
CCGACATAAA ACTGAAGCAT TATGCAGAGA AATTTCAAAT GGTCAGAGTG 
AAGCTTGTTG TCTAGCCGAG CAGTTAAATG GTCACAGTAC AAGCCCGAGT 
TCTGGTGGTG AACACTGGAA GATCGATATT TCTGATGATA AAGACGATGA 
TAGAAAATTG TCCCCTAACA AGGTCGAGGC ATCAAGTCAG GCAACTGCAT 
TTTCTGGTAT CATGAAAACC ACCGAATCTT TCACAAGAGT AAGATGGTTG 
AGGAATAGCT TGTGGAAAGC CAAGAGTGAT GAACATCTTC CGTTAAGATA 
TGATATGCCA AATCACTTAG ACTGGAGGGT TATAACCTTA TTAGCACAGA 
GGTTTAACGG GCTTACTGAA AGAAGCAGGA GTTGTTTCAG CGGTTGGAAG 
GAAAACTCTA GAGTATCTGG AAGGATGGGT GGACTTCATA TACAAGGGCC 
GCAATACAAC ACTCAGTTTG GTCGTTCCAT TCGAATAACC CTTTTACTGG 
TGTTGAGCAT CTTTCTGATT GTGCCATTTC TCGTGTACTC AGCTTGGCAA 
TGCTCATATT GGTGGCTGCT GGTGAAGGAA AAAGTATCCG TTATTGTACT 
TGCAAACCGT GGTTGGTGTT ATTCACATGC TCAGATGAAA CAAACGAGCG 
GGTAATTACA GATGGAGCTG TACATAGGAG GGGAAAAAGA AACAAAACGG 
GAACGACTTC ATTTGTGGAG AGGAAAAAGA AACAAAACGG GAACGACTTC 
ATTTGTGCAA TGCAAAATTT CCAAGATCAG AAAACGTGTT GTCACCAGCA 
GAAAATCATC CTGAGATGGA TCCATAGTTA ATGGCTATTT GGAGTCTGTT 
GTGATGGATG ATTCATTGAT TCCTGCCAAT TTCTCCTTGC TGCTGTACCC 
TCACCAAGGC AATTGTAAAA AAAAAATGTA GAGCTGTTGG GAAATGGATT 
TGAACGACTA TTGTGAATGA TTTATACAAT TTGTGGAAGT GAACAGTTTC 
GGTGAAATGA ACTGTTTGGC TGATCTGAAG GCATTTCATC AGAAAAAAAC 
ATTCAGAAGC ATGCGAGATT CTTTGTCCAC AGGTGATTCT GTAACACCTT 
GTTCCCCCCT AATTCTTAAA CCGTACTTGA GGATTTGTAG ATAGTATATC 
GCCCTTGCTT GTCTTACCAT TAGCAGTAGT ATAATTAATC TGGAAACGAA 
GAGTTCATCT GTATAAGAAC ATTTCTGTAT AGATAGCAGT CCCAGCTTGT 
GTATGGCTTC TCTGCTCACT TCTAACACTC ACCACTCGTG TCAGTCCTAC 
CTAGTTGAGG CAGAAAAAGA ACACACTTGT AGATCAGAGA TGACAATGTA 
TCGGATAGTA CATCTAGCTC GGGTATCCTA TCTATTAATG AGGATGTAGT

Gene models with high sequence identity

AT4G30240.1 [+] show detail - Syntaxin/t-SNARE family protein
E-value: 2e-29; Score: 128.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Syntaxin 6, N-terminal	6.9e-22
superfamily	t-SNARE	6e-24
Coil	coiled-coil	0

See the detailed result >

AT4G30240.1

Model type: Protein coding
Short Description: Syntaxin/t-SNARE family protein
Computational Description: Syntaxin/t-SNARE family protein; INVOLVED IN: Golgi vesicle transport, vesicle-mediated transport; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: t-SNARE (InterPro:IPR010989), Syntaxin 6, N-terminal (InterPro:IPR015260); BEST Arabidopsis thaliana protein match is: Syntaxin/t-SNARE family protein (TAIR:AT2G18860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR