K23440

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23440

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23440

Determination of introduced cDNA(s)

  • J033150J04 - Rice Full-length cDNAs - Original: J033150J04

    full reading [+] show sequence

    Nucleotide sequence: J033150J04 - full reading 
    GGCCTTCTTC GCTGGGGGTG GGGCGACGAA ACTTGCGCGA TCTCCCCTCT 
    CCTCTCCTCC GCTCGAATCT GCGCAGGCTT CTTCTACAAT CTCAAACATG 
    GTTGTTGCAA ATGGTAATGT CGACACGGAG GAAGGAACTC TTGAGATTGG 
    GATGGAGTAC AGGACAGTCT CTGGAGTTGC TGGTCCTCTA GTCATTCTTG 
    ATAAAGTGAA GGGTCCTAAA TACCAAGAAA TTGTCAATAT ACGATTAGGA 
    GATGGCACAA CTAGGCGTGG TCAAGTGCTT GAAGTCGATG GGGAGAAAGC 
    TGTTGTTCAG GTTTTCGAAG GAACATCTGG TATTGACAAC AAATACACAA 
    CTGTACAATT CACCGGTGAG GTTCTAAAAA CTCCAGTGTC ACTGGATATG 
    CTTGGACGTG TCTTCAATGG TTCTGGGAAA CCTATAGATA ATGGCCCACC 
    GATTTTACCA GAGGCTTACT TGGATATTTC TGGAAGTTCT ATCAATCCCA 
    GTGAACGAAC ATACCCTGAA GAAATGATTC AGACTGGGAT ATCTACAATT 
    GATGTTATGA ATTCTATTGC CCGTGGTCAG AAGATCCCTC TGTTTTCCGC 
    TGCTGGTCTC CCACACAATG AAATTGCTGC TCAGATTTGC CGTCAGGCTG 
    GTCTGGTAAA GCGTTTAGAG AAGAGTGACA ATATCTTGGA GAGTTCCGAG 
    GATGAAAATT TTGCGATTGT CTTTGCTGCT ATGGGAGTAA ACATGGAGAC 
    AGCACAATTT TTCAAGCGTG ATTTTGAGGA AAATGGTTCA ATGGAGAGAG 
    TTACCTTATT TCTTAATCTG GCAAATGATC CAACTATCGA GCGTATTATC 
    ACCCCAAGAA TTGCTCTCAC CACAGCAGAA TACTTGGCAT ATGAGTGCGG 
    GAAGCATGTT CTTGTCATCC TGACTGACAT GAGCTCATAT GCCGATGCAC 
    TTCGTGAAGT TTCTGCAGCT CGAGAGGAAG TACCTGGACG GCGTGGTTAT 
    CCTGGTTATA TGTATACTGA TTTGGCAACT ATCTATGAGC GTGCTGGTCG 
    CATAGAAGGA AGAAAAGGAT CAATTACGCA GATACCCATT TTAACCATGC 
    CTAATGATGA TATTACACAT CCAACTCCTG ATCTTACTGG TTATATCACT 
    GAGGGACAGA TCTACATTGA CAGGCAACTA CATAATCGAC AGATCTATCC 
    ACCGATTAAT GTCCTTCCTT CACTCTCCCG GCTCATGAAG AGTGCTATTG 
    GTGAAGGCAT GACTCGCAGG GATCATTCTG ATGTCTCGAA CCAGCTGTAT 
    GCCAATTACG CCATAGGCAA GGACGTACAG GCGATGAAGG CAGTGGTTGG 
    AGAGGAAGCG CTGTCATCAG AGGACCTGCT GTACCTCGAG TTTCTTGACA 
    AGTTCGAGCG GAAGTTCGTG ACACAAGGAG CATATGACAC ACGCAACATC 
    TTCCAGTCGC TTGACCTCGC CTGGTCACTA CTGCGCATCT TTCACCGAGA 
    GCTGCTTCAC CGTATACCAG CGAAAACCCT TGACCAGTAT TATAGCCGTG 
    ATGCCTCCCA CTGATCTGCA AAGGGTCGTG TGTAATAAGA AAAAAAACCA 
    TCCCGGACTC CCACTTCTTC TCTTTCATTT TTGCCACCAA TGCATTCATT 
    ATTTTTTGTG TAAAAAACAC GAATTATCTA GTGATGTGGG CTTCCATCAT 
    TGTTGTCCCA AGCACACCAT GTATCATATT TATCTTCTTT TTTGGAAGAA 
    AATGTATTAT TTTCTTGCCG TGGAAAAATG AATAAGTGAG GACGAGTGAG 
    CTAGGGATTT GGTTAATGTA AGAACACAAT GAAATAAGCC ATTTGCCTCA 
    TGGTTTTCGC CTGTCAATTG AGTTTCAGAC CCTCTTGGCT TCG

    Gene models with high sequence identity

    1. AT4G38510.5 [+] show detail - ATPase, V1 complex, subunit B protein
      E-value: 0; Score: 924.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain, active site 0
    Gene3D no description 4.8e-90
    HMMPfam ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain 1.6e-61
    HMMPfam ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal 0.0000000000000023
    HMMPfam ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal 0.0000000000022
    superfamily P-loop containing nucleoside triphosphate hyd 6.7e-89
    HAMAP VATB_MF_00310 55.5
    ProfileScan RhoGAP 8.564
    HMMTigr ATPase, V1 complex, subunit B 0
    HMMPanther V-TYPE ATP SYNTHASE BETA CHAIN 7.1e-245
    HMMPanther ATP SYNTHASE 7.1e-245

    See the detailed result >

    AT4G38510.5

    Model type
    Protein coding
    Short Description
    ATPase, V1 complex, subunit B protein
    Computational Description
    ATPase, V1 complex, subunit B protein; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, ATP binding, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: proton transport, ATP metabolic process, ATP synthesis coupled proton transport; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, alpha/beta subunit, nucleotide-binding domain, active site (InterPro:IPR020003), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, alpha/beta subunit, nucleotide-binding domain (InterPro:IPR000194), ATPase, V1 complex, subunit B (InterPro:IPR005723); BEST Arabidopsis thaliana protein match is: ATPase, V1 complex, subunit B protein (TAIR:AT1G76030.1).
    Link
    InterPro Scan - TAIR