K23442

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23442

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23442

Determination of introduced cDNA(s)

  • J013064D20 - Rice Full-length cDNAs - Original: J013064D20

    full reading [+] show sequence

    Nucleotide sequence: J013064D20 - full reading
    TGCTCGCAAA ACTCACCCAA AAGAGCAGCG TCGCCTCTCC TCCTCCTCCC 
    TAACCCCTAC GCTTCCAGAA CCTTCTCGAA GCTCCCGCTC CCCCCCCCCT
    TCCGCTCCAA TGGCGAAGGA ACCGATGCGC GTGCTCGTCA CCGGCGCCGC
    AGGACAAATT GGATATGCTC TTGTCCCCAT GATTGCTAGG GGTGTGATGT
    TGGGTGCTGA CCAGCCTGTT ATTCTACACA TGCTTGACAT TCCACCAGCT
    ACTGAATCTC TTAATGGCCT TAAGATGGAG CTGGTTGATG CTGCATTTCC
    TCTTTTGAAG GGAATTGTCG CAACAACTGA TGTTGTGGAG GCCTGCACTG
    GTGTGAATGT TGCGGTTATG GTTGGTGGGT TCCCCAGGAA GGAGGGAATG
    GAAAGGAAGG ATGTTATGTC AAAAAATGTC TCCATCTACA AATCCCAAGC
    TTCTGCTCTT GAGGCTCATG CAGCCCCTAA CTGCAAGGTT CTGGTAGTTG
    CCAATCCAGC AAACACCAAC GCTCTCATCT TAAAAGAATT CGCTCCATCC
    ATCCCTGAGA AGAACATTAC TTGCCTCACC CGTCTTGACC ACAACAGGGC
    ACTTGGCCAG ATCTCTGAAA AACTTAATGT CCAAGTTACT GATGTGAAGA
    ATGCGATCAT CTGGGGCAAC CACTCATCCA CCCAGTACCC TGATGTTAAC
    CACGCCACTG TGAAGACTCC CAGTGGAGAG AAGCCTGTCA GGGAACTCGT
    TGCTGATGAT GAGTGGTTAA ATACGGAATT CATCTCTACC GTCCAGCAGC
    GTGGTGCCGC CATCATCAAG GCGAGGAAGC AATCCAGTGC CCTATCTGCT
    GCCAGCTCTG CATGCGATCA CATTCGTGAC TGGGTTCTTG GCACTCCTGA
    GGGAACATTT GTCTCCATGG GTGTGTACTC TGATGGTTCG TATGGTGTGC
    CTGCTGGTCT GATCTACTCG TTCCCAGTAA CATGCAGTGG TGGCGAATGG
    ACGATTGTTC AGGGTCTCCC GATCGACGAG TTCTCAAGGA AGAAGATGGA
    CGCGACTGCC CAGGAGCTGT CGGAGGAGAA GACGCTCGCT TACTCATGCC
    TCAACTAAAA CTAAGCAATA CCCAGAGGGA CAGATAGTGA GCGATTGCCC
    GCTCCCGTGT TTTTGAATAA AAGAGACTTT TAAGTTCCAT CACATAGAAA
    CTGTTTATCT CAGACCGCTG CACATCGCGA GATGTGGAGC GCAGATGCCG
    TTGCTGGTTT TACTCCAGTG TGTATTGAGG CTTTGTACTA GCTCCCTTTT
    TTTTGCCTGG TGATTCGCAG GACATTTGCT GAAAACATTG AACCCATTTG
    ACATCTGATG GAATCATGGA CCAGTAGCAA GTACATTTTG CG

    Gene models with high sequence identity

    1. AT5G43330.1 [+] show detail - Lactate/malate dehydrogenase family protein
      E-value: 5e-166; Score: 581.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR L-lactate/malate dehydrogenase 4.3e-64
    superfamily Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 1.7e-60
    superfamily NAD(P)-binding domain 1.2e-44
    PatternScan Malate dehydrogenase, active site 0
    HMMTigr Malate dehydrogenase, NAD/NADP 3.6e-239
    HMMTigr Malate dehydrogenase, NAD-dependent, cytosolic 2.3e-267
    HMMPfam Lactate/malate dehydrogenase, C-terminal 1.2e-41
    HMMPfam Lactate/malate dehydrogenase, N-terminal 8.4e-33
    Gene3D NAD(P)-binding domain 2.5e-51
    Gene3D Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 3.6e-71
    HMMPanther Malate dehydrogenase, NAD/NADP 3e-129

    See the detailed result >

    AT5G43330.1

    Model type
    Protein coding
    Short Description
    Lactate/malate dehydrogenase family protein
    Computational Description
    Lactate/malate dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: in 6 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD-dependent, cytosolic (InterPro:IPR011274), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Malate dehydrogenase, NAD/NADP (InterPro:IPR010945), Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), NAD(P)-binding domain (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: Lactate/malate dehydrogenase family protein (TAIR:AT1G04410.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR