K23451

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23451

Determination of introduced cDNA(s)

J023143D19 - Rice Full-length cDNAs - Original: J023143D19

full reading [+] show sequence

GACCCCAACA AACACCAACA CACCCACCTT CTCCCCCTCT TCGTCTTCCC 
CCAATTCAAG AAGCGGAGGA GAGAGCGCGG CGGGGGTGGA GAGAAGGTTC 
TAGATTGTTC TGGAGGTGGA GGGATGTGGG GGCGGCAGTA CTGGGGCGGC 
GGCCGGCGGC CGAGCGGCGG CGGCGGCGGG GTGGTGGTGA TGTTCGCGTG 
GCTGTCGAGC CAGGAGCGGC AGGTGCGGGC GTACGTGGAG CTGTACGCGG 
CGCGGGGTGG GCGTGCCTCG TCTGCCACTC CGAGTTCCTC ACCCTGTTTT 
TCCCTGATAA GGCTGCCATG CTTGCTGATA GGGTGCTTGC AGAACTAGTT 
AAGGAACTGA AGGTTAGACC TGTACCTGTT GTGTTTGCCT CATTCTCTGG 
AGGCCCAAAA GGCTGCACAT ACAAGGTTCT TCAGCTGATC GAGAGAAGAT 
GCGAGGGTCA ACTGAGCCTG GAGGAGTATC AACTTGTAAG AGACTGTCTT 
TGCGGGCAGA TGTACGACTC GAGTCCTGTA GATTTTGTTA GTGATTTGGG 
CACCCGATTT CTCCTTCACC CAAGTGTCCT GAAGATGTCT CAACCGCCTC 
GTATCCTATC ATGGATGACT AGAGGCATTG CCTCGGGACT AGACACGCTG 
TTCATTGGCA AATTTGAAGC GCAACGTGCA GAATATTGGG ACACACTATA 
CTCATCAGTG GTATGTCACT CTGTTCTCTC AGTGACTTGT AATCTGATTG 
TCAACGGAAG TGTTTGTGGA TATCTGAGTA AACATTGGTC TATTGTACTT 
TCAGCATGTT GGTCCAATAC TCATATTCTG TTCTGAAGAC GATGAACTTG 
CTCCGTGTTC AATTGTTCAA AAATTTGGTC GACGTCTGCT GGAGCTTGGT 
GGTGATGTGA ACCTAGTTAA ATGGCAAAAT TCTCCTCATG TAGGTCACTA 
CAAGCATCAT CCTGAGGAAT ACCGAGCTGC AGTAACTGAG CTACTCACAA 
AGGCTTCAAT GCTTTACATG AGCAGGAGGC AACTTAACAG CTATGATCTA 
GGCACAAGTG AGCATAGCGA CATGTTGGCC TCCGACGTGC ATAAAGCTGG 
CACGAATTCA AACAACAGGC TAAGAAGGGC ACCAGATGAT CCGATTGACC 
ATTTCTTGCT ACCGAGTTCC ATGGAGTATC ATGAAAGCAG CAACGAAGAG 
CCGAAACCGG AGTTGTTCAA CATGCCCAGT GTGGAAAGCA TTAACAACCC 
CCATGGAGTG TTGGGTCAGA TGCTTTACGA TGTATGCGTC CCCAAGAACG 
TAGAAGGCTG GGACTTCAAG CCTTCTGCAT CAATAAACGG GAGGCATATA 
AATTCTATTG CTCGTCAGCA TGGCACTTTC AATCCGATAA AATGCATACG 
GCGCTCAAAA TTGTAAAAAT GTTCAACTGG AGTACCCTGA TGCATATAGC 
TGACCAGTGT ATACTATGAG AGAACATTGT TTGATGGATG CTGGTGAAAA 
TTTGAGATAC CTGCTATCCA TTGAATAAAA TGCGAGATAT TTTTGTAGAT 
AAAGTAATGA AGTATAATAT GTTACTATTG CTGAGG

Gene models with high sequence identity

AT2G15695.1 [+] show detail - Protein of unknown function DUF829, transmembrane 53
E-value: 5e-89; Score: 22.30

InterPro Scan Digest

Program	Description	E-value
HMMPanther	FAMILY NOT NAMED	0.00031
HMMPfam	Protein of unknown function DUF829, transmembrane 53	4.8e-26
HMMPfam	Protein of unknown function DUF829, transmembrane 53	6.7e-17
superfamily	alpha/beta-Hydrolases	0.00000028

See the detailed result >

AT2G15695.1

Model type: Protein coding
Short Description: Protein of unknown function DUF829, transmembrane 53
Computational Description: Protein of unknown function DUF829, transmembrane 53; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF829, transmembrane 53 (InterPro:IPR008547); BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF829, transmembrane 53 (TAIR:AT5G44250.1); Has 153 Blast hits to 151 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Link: InterPro Scan - TAIR