K23506

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23506

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23506

Determination of introduced cDNA(s)

  • J033117K11 - Rice Full-length cDNAs - Original: J033117K11

    full reading [+] show sequence

    Nucleotide sequence: J033117K11 - full reading 
    GACCTTCTCC TCCCTCGTCT CCTCTCCTCG TTCGGACCGA CGGCGACGGC 
    CGCCTAAATT ATCCATACCT CCCCTCCGCC GTGGCCACCA GCCACCTCCA 
    CGAATCCAAT TCCAACATCT CCTCCTCCTC CTCCGCCGCC GCCGGGGGGA 
    TCCGCGCTGC GCCGTGGTAA GCCCATCTCT CTCCCGGCCT TCCCGGCTCG 
    ACGTTCGTTG TGGGGGGCGT GTTTTGCGCC CGAGGATTGG TGGGTTGGCG 
    GGGGGATGGG GATTGGGGCG TCGGACGAGC TGCTGGGCAC GTTCGTGCCG 
    ATCGCCGTGT ACTGGCTCTA CTCGGGGCTG TACCTCGCGC TGGACGGCGT 
    GGAGCGGCTG GACGTGTACC GGCTGCACCC CAGGGAGGAG GAGGCCGCCA 
    AGAACGTCGT CTCCAGGGGC ACCGTCGTCA GGGGCGTCCT CGTCCAGCAG 
    GCCTTCCAGG TCGCCGTCTC GCTCACCCTC TTCGCGGTTA TTGGTGATGA 
    AAGTGATATT GAACAGAAGC AACCTTCTGC CCTTGTGATA TTGCTGCAAT 
    TTGCCATTGC AATGTTCGTT ATGGATACAT GGCAGTACTT CATGCACAGA 
    TACATGCACA TCAACAAGTT CCTATATAAA CATATCCACT CCAAGCACCA 
    CACTCTTGTA GTCCCTTATT CCTTTGGAGC TCTTTACAAC CATCCTCTTG 
    AGGGTCTTAT TTTGGACACC ATTGGTGGTG CTCTCTCATT CCTCGTCTCT 
    GGTATGACAC CACGGACATC CATATTCTTT TTCTCGTTCG CAACCATCAA 
    GACAGTGGAT GATCATTGTG GTCTGTGGCT TCCTGGTAAC ATCCTCCATG 
    CGCTGTTCAA CAACAACAGC GCTTATCATG ACATTCATCA TCAGCTCTAT 
    GGAAACAAGT ACAACTTTTC ACAACCATTT TTTGTCATTT GGGACAAGAT 
    ACTTGGAACT TACATGCCTT ACTCTATCGA GCACAGAAAA GGAGGAGGGT 
    TTGAGTCACG GCCAGTTAAA CTCAACATAG CAGAGCAGAC CAAGACTGAT 
    TAGTGTATTC TCGGTCCACT ACTCTCGGCT CTGTGGTACC CTGATCTTCT 
    AACTACACTG TTGGTGTGAA ATTATCACCT TGTTCGTATA GTGATGTTTT 
    TCTTGTTCTC TATATTCTTC TTCTGTTACC TTTTGGGAGG GGTTCTCCTT 
    GTACCAAGGT ATAGTGAGTA AATTAGTGTA CTATATCAAA GAATACTAAA 
    GCACTAAGAT CCACTTGGAT CTGTTTCCTG GAGATTGGCT GCATGTATTG 
    AGCTTACATG CATGCCAATG TTAACAAGAG AAGATGATAT TTACACTGTA 
    TGCAGCTATG CAGTAAGCCA GTAACTTTTG TGGTGC

    Gene models with high sequence identity

    1. AT1G69640.1 [+] show detail - sphingoid base hydroxylase 1
      E-value: 3e-108; Score: 389.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SUR2 HYDROXYLASE/DESATURASE 8.1e-132
    HMMPanther STEROL DESATURASE 8.1e-132
    HMMPfam Fatty acid hydroxylase 3.6e-18

    See the detailed result >

    AT1G69640.1

    Model type
    Protein coding
    Short Description
    sphingoid base hydroxylase 1
    Curator Summary
    Encodes one of the two redundant sphingoid base hydroxylases (SBH). Involved in sphingolipid trihydroxy long-chain base (4-hydroxysphinganine) biosynthesis. Double mutants of SBHs were dwarfed and not able to progress from vegetative to reproductive growth.
    Computational Description
    sphingoid base hydroxylase 1 (SBH1); CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: sphingoid base hydroxylase 2 (TAIR:AT1G14290.1); Has 2400 Blast hits to 2339 proteins in 395 species: Archae - 0; Bacteria - 406; Metazoa - 416; Fungi - 708; Plants - 429; Viruses - 3; Other Eukaryotes - 438 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR