K23508

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23508

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23508

Determination of introduced cDNA(s)

  • J023105N19 - Rice Full-length cDNAs - Original: J023105N19

    full reading [+] show sequence

    Nucleotide sequence: J023105N19 - full reading
    GGTTGGTGAC CAGCTAGCTG ATAGCTGAGT CAATTTGTGT GACTTAATTT 
    GCGACCACGT AGCAGTATAT GTATAGTATT AGTATAGCCC CGAAGTTAGT
    TGAAGACCTC TTGGAGTAGA GATCGAGGAA GAAGAAATAA TCAATGGAGT
    GTTGGGAGAA GAAGCCAAGG AATCTGGGTG GCTCGCTGCC GGTGCCCAAC
    GTGCAAGACC TCGCCGCCCG CCCGGACCAC CTCACGCCCA CCCTCCTCCG
    CCGCTATCTT CGCCCGCACC ACCTGTCCCT GCCCGCCGAC GACCACCATG
    CCATGGCTAT GATACCTGTC GTTGACTTTG CCAGGCTCAT CGATCACCAT
    GAGGAGGCCG CCAAGCTGAG GCACGCCTGC GAGGAGTGGG GTTTCTTCCA
    GGTGATCAAC CACGGAATCG CCGACGAGAC GGTGGAGGAG ATGAAGCGCG
    ACGTCATGGC CTTCTTCAAC CTCCCGCTGG CCGACAAGGC GGCGTTCGCG
    CAGCAGCCGG AATGGATCGA GGGCTACGGC CAGGCGTTCG TCACGTCGGA
    GGACCAGACG CTGGACTGGT CCGACCTCTA CTTCCTCACC ACGCAGCCGC
    CCAGCTACCG CGATCTCCGC TTCTGGCCAC CGGAGACATC CTCCACCTTC
    CGCCGCTCCA TGGACCGCTA CTCCCTCGAG ACGCAGCGGG TGGCCACCGA
    GCTCCTCCGA GCCATGGCGC GCAACCTGGG CCTGCGCGAC GCCGACAAGA
    TGACAAGGCT CGCCGCGGCG CAGTCCATGC GGATGAACTA CTACCCGCCA
    TGCCCGGCCA AGGAGAGGGA CAGGGTCCTG GGCGTGTCGC CGCACTCGGA
    CGCCGTGGGG CTGACGCTGC TGCTGCAGGT GAGCCCGGTG AAGGGGCTGC
    AGATCAGGAG GGGCGACGAC TGGATCCCCG TCGACCCCAT CCCCGGCGCA
    CTGGTGGCGA ACGTCGGCGA CGTGGTCGAG ATGGTGACGA ACGGCAGGTA
    CAAGAGCATC GAGCACCGGG TGGTGGTGGA CGCGGCGCAG GAGCGGGTGT
    CCGTGGCGGC GTTCCACAAC GCCACGTTCG GGTCGACGTA CGGACCACTG
    GAGGAGATGG TGGGAGGCGG CGAGGCGCGC TACCGGAGCA TCAGCGTGGA
    GGACTACGTC AGGCTCGTCG TCTCCAGCAA GCTCCAGGGC AAGAACATCT
    TGGACGCTGT CAAGATTATT ACTACGACTT AATTTCTCAT CTTATCATGC
    CTGCTGATTA ATCAATCAAT CAATCTCCCT GGTTGGTTGG TTGCTGCCGA
    GTAAACTATT CATGCCACTT CAATTATTAG TAGGTAAAAA GGATCTATCA
    TGCATACTAC TTTCCGTTTT TATTGGAGTA AGGTTTATAT AGGAGTACCT
    TTGAATAAAC AAACAAATCT CGTCTACTTT GATGTAAAGG TTTGTTGTAT
    ATGAGGTTTG CTTCATTGTA CGCTACAGTT GCCTGAGTAT ACGGCTAATG
    TACATGTGTC TTGCTACATA AACAATTAGT AATTACAAGG TACACAAGCT
    TTAGC

    Gene models with high sequence identity

    1. AT1G17020.1 [+] show detail - senescence-related gene 1
      E-value: 4e-75; Score: 279.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 3.2e-85
    HMMPanther ETHYLENE-FORMING-ENZYME-LIKE DIOXYGENASE 3.6e-136
    HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 3.6e-136
    superfamily Clavaminate synthase-like 4.2e-87
    HMMPfam Oxoglutarate/iron-dependent oxygenase 1.4e-22

    See the detailed result >

    AT1G17020.1

    Model type
    Protein coding
    Short Description
    senescence-related gene 1
    Curator Summary
    Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene.
    Computational Description
    senescence-related gene 1 (SRG1); CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G17010.1); Has 8560 Blast hits to 8517 proteins in 996 species: Archae - 0; Bacteria - 1133; Metazoa - 115; Fungi - 988; Plants - 4970; Viruses - 0; Other Eukaryotes - 1354 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR