K23508

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23508

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23508

Determination of introduced cDNA(s)

  • J023105N19 - Rice Full-length cDNAs - Original: J023105N19

    full reading [+] show sequence

    Nucleotide sequence: J023105N19 - full reading 
    GGTTGGTGAC CAGCTAGCTG ATAGCTGAGT CAATTTGTGT GACTTAATTT 
    GCGACCACGT AGCAGTATAT GTATAGTATT AGTATAGCCC CGAAGTTAGT 
    TGAAGACCTC TTGGAGTAGA GATCGAGGAA GAAGAAATAA TCAATGGAGT 
    GTTGGGAGAA GAAGCCAAGG AATCTGGGTG GCTCGCTGCC GGTGCCCAAC 
    GTGCAAGACC TCGCCGCCCG CCCGGACCAC CTCACGCCCA CCCTCCTCCG 
    CCGCTATCTT CGCCCGCACC ACCTGTCCCT GCCCGCCGAC GACCACCATG 
    CCATGGCTAT GATACCTGTC GTTGACTTTG CCAGGCTCAT CGATCACCAT 
    GAGGAGGCCG CCAAGCTGAG GCACGCCTGC GAGGAGTGGG GTTTCTTCCA 
    GGTGATCAAC CACGGAATCG CCGACGAGAC GGTGGAGGAG ATGAAGCGCG 
    ACGTCATGGC CTTCTTCAAC CTCCCGCTGG CCGACAAGGC GGCGTTCGCG 
    CAGCAGCCGG AATGGATCGA GGGCTACGGC CAGGCGTTCG TCACGTCGGA 
    GGACCAGACG CTGGACTGGT CCGACCTCTA CTTCCTCACC ACGCAGCCGC 
    CCAGCTACCG CGATCTCCGC TTCTGGCCAC CGGAGACATC CTCCACCTTC 
    CGCCGCTCCA TGGACCGCTA CTCCCTCGAG ACGCAGCGGG TGGCCACCGA 
    GCTCCTCCGA GCCATGGCGC GCAACCTGGG CCTGCGCGAC GCCGACAAGA 
    TGACAAGGCT CGCCGCGGCG CAGTCCATGC GGATGAACTA CTACCCGCCA 
    TGCCCGGCCA AGGAGAGGGA CAGGGTCCTG GGCGTGTCGC CGCACTCGGA 
    CGCCGTGGGG CTGACGCTGC TGCTGCAGGT GAGCCCGGTG AAGGGGCTGC 
    AGATCAGGAG GGGCGACGAC TGGATCCCCG TCGACCCCAT CCCCGGCGCA 
    CTGGTGGCGA ACGTCGGCGA CGTGGTCGAG ATGGTGACGA ACGGCAGGTA 
    CAAGAGCATC GAGCACCGGG TGGTGGTGGA CGCGGCGCAG GAGCGGGTGT 
    CCGTGGCGGC GTTCCACAAC GCCACGTTCG GGTCGACGTA CGGACCACTG 
    GAGGAGATGG TGGGAGGCGG CGAGGCGCGC TACCGGAGCA TCAGCGTGGA 
    GGACTACGTC AGGCTCGTCG TCTCCAGCAA GCTCCAGGGC AAGAACATCT 
    TGGACGCTGT CAAGATTATT ACTACGACTT AATTTCTCAT CTTATCATGC 
    CTGCTGATTA ATCAATCAAT CAATCTCCCT GGTTGGTTGG TTGCTGCCGA 
    GTAAACTATT CATGCCACTT CAATTATTAG TAGGTAAAAA GGATCTATCA 
    TGCATACTAC TTTCCGTTTT TATTGGAGTA AGGTTTATAT AGGAGTACCT 
    TTGAATAAAC AAACAAATCT CGTCTACTTT GATGTAAAGG TTTGTTGTAT 
    ATGAGGTTTG CTTCATTGTA CGCTACAGTT GCCTGAGTAT ACGGCTAATG 
    TACATGTGTC TTGCTACATA AACAATTAGT AATTACAAGG TACACAAGCT 
    TTAGC

    Gene models with high sequence identity

    1. AT1G17020.1 [+] show detail - senescence-related gene 1
      E-value: 4e-75; Score: 279.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 3.2e-85
    HMMPanther ETHYLENE-FORMING-ENZYME-LIKE DIOXYGENASE 3.6e-136
    HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 3.6e-136
    superfamily Clavaminate synthase-like 4.2e-87
    HMMPfam Oxoglutarate/iron-dependent oxygenase 1.4e-22

    See the detailed result >

    AT1G17020.1

    Model type
    Protein coding
    Short Description
    senescence-related gene 1
    Curator Summary
    Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene.
    Computational Description
    senescence-related gene 1 (SRG1); CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G17010.1); Has 8560 Blast hits to 8517 proteins in 996 species: Archae - 0; Bacteria - 1133; Metazoa - 115; Fungi - 988; Plants - 4970; Viruses - 0; Other Eukaryotes - 1354 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR