K23511

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23511

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23511

Determination of introduced cDNA(s)

  • J013095K16 - Rice Full-length cDNAs - Original: J013095K16

    full reading [+] show sequence

    Nucleotide sequence: J013095K16 - full reading 
    TTTCCCGCAC CGCCACCGCC ACTCCCCCCC CCCGCGCCGC CACCCCACCC 
    CACCCCACCC CACGCCGTCT CCTCCGATCG CCGGAGAAGG AGGAGGAGGC 
    GTCAGCCATG GCGCTGGCCT TCGACGAGTT CGGCCGCCCC TTCATCATCC 
    TGCGTGAGCA GGAGAAGAAG TCGCGGCTGC GCGGCCTCGA CGCCCAGAAG 
    GCCAACATCG CCGCCGGCAA GGCCGTCGCC CGCATCCTCC GCACCTCGCT 
    CGGCCCCAAG GGCATGGACA AGATGCTCCA GTCCCCCGAC GGCGACGTCA 
    CCATCACAAA TGATGGCGCA ACGATCCTGG AGCAAATGGA TGTGGACAAC 
    CAAATCGCGA AGCTGATGGT GGAGCTGTCC TGCAGTCAAG ACTACGAGAT 
    TGGGGATGGT ACCACTGGTG TTGTGGTCAT GGCTGGCTCT CTCCTGGAGC 
    AAGCCGAGAA ACTGCTGGAA CGCGGCATTC ACCCCATAAG GATCGCCGAA 
    GGTTATGAGT TGGCCTCAAG GATAGCTTTT GATCACCTTG AGCACATCTC 
    CCACAAGTTT GAGTTTAGTG CTACCAATAT AGAGCCTCTG GTGCAGACCT 
    GCATGACAAC CCTGTCATCG AAAATTGTTA ACCGTTGTAA GAGGACTCTT 
    GCTGAGATTG CTGTGAAAGC GGTCCTTGCT GTGGCTGATT TGGAAAGGAA 
    GGATGTAAAC TTGGACTTGA TCAAAGTGGA AGGTAAGGTA GGCGGGAAAC 
    TAGAGGATAC TGAGCTAGTA TATGGAATCA TTGTCGACAA AGATATGAGC 
    CACCCTCAAA TGCCAAAGAG GATTGAGGAT GCTAAGATTG CCATCCTGAC 
    CTGCCCATTT GAGCCCCCGA AGCCTAAGAC AAAGCATAAG GTTGACATTG 
    ATACTGTAGA GAAGTTCCAG ATGCTGCGTG AGCAAGAGCA AAAATACTTT 
    GATGAAATGG TTCAGAAATG CAAGGATGTT GGAGCAACCC TAGTTATTTG 
    CCAATGGGGC TTTGATGATG AAGCCAATCA TCTGCTGATG CATAGAAATT 
    TGCCAGCTGT CAGATGGGTT GGTGGTGTTG AATTAGAATT GATTGCCATT 
    GCTACAGGAG GGCGGATTGT TCCGAGGTTC CAAGAGTTGA GTCCTGAAAA 
    GCTTGGGAAG GCTGGAATAG TCAGAGAGAA ATCATTTGGA ACAACAAAAG 
    ATCGCATGCT TTACATTGAA CAGTGTGCCA ACTCCAGAGC TGTAACTATC 
    TTCATACGTG GTGGCAACAA AATGATGATT GAGGAGACCA AGCGAAGTCT 
    TCATGATGCT CTTTGTGTTG CAAGGAATCT TATCCGTAAT AATTCAATTG 
    TGTATGGTGG TGGTTCAGCA GAAATATCTT GCTCAGTTGC TGTTGAAGCT 
    GCTGCAGATC GGTACCCAGG AGTTGAACAG TATGCAATCA GGTCATTTGC 
    TGATGCGTTG GATGCTATTC CACTAGCCTT GGCCGAAAAC AGTGGTTTGT 
    CTCCTATTGA TACACTGACA GCAGTAAAAT CTCAACAAGT AAAGGAGAGC 
    AATCCTCACT GTGGCATTGA CTGCAACGAT GTTGGGACAA ACCACATGAA 
    GGAACAAAAT GTTTTTGAAA CACTGATAGG CAAGCAGCAG CAGATCTTAC 
    TGGCAACCCA GGTGGTGAAG ATGATTCTCA AGATCGATGA TGTTATCTCG 
    CCTTCTGACT ATTGATGATG CTTTTGAAGA CTATGGAGTT TATTGTGCTA 
    GGGCCTTGGC GACAAGCACT TCCAGTAGGC TCTACATTTT CTGTCGATCG 
    GTTTTTGATT AACATTTACG CCATGGGTTT GCTTGCTTGT GCTATTTGAT 
    GAGCTATCTG TTTGTGTGAA CTTAACTTTT GGTACTTTGT TTTTCGCGCC 
    CGCACTTTGT ATAGCTTGAG ACAATAGCAC AATCCCTTTG AAGCTGGCCT 
    AGAAGTTTGA GTAGCTACCA TTTGCTCTTG TGCTGCTCAG ATTCGTAGAT 
    GCTATATAGG TTGCGCGCTG TGGTAGTATC GTATTGTGTT CTGCATCGTC 
    CGCATGTACT CTACTTTTCT TAATGATCAT TTTGAGCCAT ATGAATATTT

    Gene models with high sequence identity

    1. AT1G24510.1 [+] show detail - TCP-1/cpn60 chaperonin family protein
      E-value: 0; Score: 929.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.1e-74
    FPrintScan Chaperone, tailless complex polypeptide 1 9.8e-30
    FPrintScan Chaperone, tailless complex polypeptide 1 9.8e-30
    FPrintScan Chaperone, tailless complex polypeptide 1 9.8e-30
    FPrintScan Chaperone, tailless complex polypeptide 1 9.8e-30
    FPrintScan Chaperone, tailless complex polypeptide 1 9.8e-30
    HMMTigr T-complex protein 1, epsilon subunit 0
    PatternScan Chaperonin TCP-1, conserved site 0
    PatternScan Chaperonin TCP-1, conserved site 0
    PatternScan Chaperonin TCP-1, conserved site 0
    HMMPfam Chaperonin Cpn60/TCP-1 6.5e-147
    superfamily Chaperonin Cpn60/TCP-1 3.8e-87
    superfamily GroEL apical domain-like 2.5e-54
    superfamily GroEL-intermediate domain like 1.4e-30
    HMMPanther T-complex protein 1, epsilon subunit 0
    HMMPanther Chaperonin Cpn60/TCP-1 0

    See the detailed result >

    AT1G24510.1

    Model type
    Protein coding
    Short Description
    TCP-1/cpn60 chaperonin family protein
    Computational Description
    TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), T-complex protein 1, epsilon subunit (InterPro:IPR012718), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G18190.1); Has 18150 Blast hits to 18008 proteins in 3818 species: Archae - 807; Bacteria - 8763; Metazoa - 2077; Fungi - 1503; Plants - 864; Viruses - 0; Other Eukaryotes - 4136 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR