K23526

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23526

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23526

Determination of introduced cDNA(s)

  • J013000N08 - Rice Full-length cDNAs - Original: J013000N08

    full reading [+] show sequence

    Nucleotide sequence: J013000N08 - full reading
    GAGGCGGCAA TGGCCACCGA GCCTTCCACC TCCGCACCAG CCTCCCCCGC 
    CGCCGTCGCC GGCGGCGACG ACTCCCTCGA GCCATGGAGC GCGCGGGTGC
    GCACCCTGAC GCGCCTCGGC CGGCACAGGG AGGCCCTTGC CCTCCTCCGC
    CACGGCGACC CCTCGCCGCC GCCGCACGCC CTGGCGCTCC CGGCGGCGGT
    GATCTCCTGC GCCAAGCTGC ATCTCGCCTC GGGCGTCGCC CAGATACACG
    CGCTCGCGGC CAAGCGCGGC CTCCTCCCGT CCTCCGACGC CTACCTCCTC
    TCCGCGCTGC TCTCCTCCTA CTCCCGCCTC CGCCTCCTCC CGCTCGCCCG
    CCAGCTCCTC GACGAATTGC CCCTCGCGTC CACGCCGCCC GCCACGGCGC
    GCACCGCGTT CAACTCCCTC ATCTCCGGGT GCGCGCTCCA CGGGGTCCCG
    GCCGGCTGCT TCTCCCTCTT CCGCCGCATG CGCGTGGCCG CCGGCGTCCG
    CTTCGACGCC GTCACGCTGC TGGCGCTCGT CCCCGTTGCT CCCCTGGGCA
    TCGTGCCGCA GCTCCACGCC CTCGCGGCGC GATCGGGGCT CGCCGCGAAC
    ACTTCCGTGG CCAACTGCCT CGTGTCTGTC TACGCGCGCG GCGGCGGCGG
    CGGCGCCTCC CTTGCCCGCC AGGGTTTTCG AGGAGATGCC GCGGGCCTCC
    CGCGACCTCG TGTCGTGGAA CGCGGTGATC TCCGCCCACG CGCAGAACGG
    CCTCGCCGTG GAGGCCGTCG AGCTGTACCG GCGCATGCGT GGCCCGGAAG
    GCGGCGGGGT GGAACCGGAC GCCGTGACGC TCGTCGGCGT CCTCTCCTCC
    TGCGCGCACA CCGGCGCGCG CCGCGTGGGC CTTGACGTCG AGCGGTACGT
    GCGGGATACA ATCCCGGGCT TCCGCGACAA CCTGCCGCTC TGCAACGCGC
    TCATCAACTT CCACGCGCGC TGCGGCAGCT TGGCCCAGGC GCAGGAGCTG
    TTCGACGAAA TGCCCGAGAG GAGCGTCGTC TCGTGGACGA CGCTGATCAT
    CGGGTACGGC ATGCACGGAC AGGGCGACAT CGCCGTCGAC CTCTTCGAGA
    CGATGGTGTC GGAAGCAACC GCGCCGGACA GCGTGGCCAT GGTCGGCCTT
    CTGTCGGCGT GCAGCCACGC CGGCATGTAC GACGAAGGGC GCAAGTACTT
    CTCAACAATG GAGCGCGATT ACTGCCTCCG GCCCAAACTG GAGCACTACA
    CCTGCATGGT GGACCTCCTC GGACGAGCCG GCCGTCTCGA CGAAGCACGG
    GAGCTCATCG CGTCGATGCC GATGGCGGCC GACGGCGCGG TCTGGGGCGC
    GCTGCTCGGA GCCTGCAAGA TACACAAGAA CGTGGAGATG GGAGAAGAGG
    CCTTCGAGCG CGTCGTCAGC CTCGAGCCGG CCAACGTGGG GTACTACGTG
    CTCATGGCGA ACATCTACGC CGACGCCGGG CAGCTCGACG GCGTGGCGAA
    GGTGCGGGCG GCGATGAGGC GGCGCGGGCT CAGGAAGGAG CCCGGGTGTA
    GCTACGTCGA GCACAAGGGG AAGGTCCACC TGTTCATGGC CGACGACCAC
    TCGCACCCGC AGGCGAGGAG GATCTACGAG CTCGTGGTCG AGCTGGAGCG
    GATGGTGAAG GAGAAGACGG GTGGCGATGT GGTTGAGGAG CGCGCTGAGA
    AGGCGGTAGC GGAGGCGGCG GCCGTGCCAT TGGTGGGGTT CCACAGCGAG
    AAGCTGGCGG TGGCGTTCGG GTTGCTGAAC ACGGAGGCGG GAAGTGAGAT
    CGTGGTGATC AAGAACCTGC GGGTGTGCGG GGACTGCCAC TCGTTTCTGA
    AGACGATCTC GGAGTTGACA AATAGAGCGT TTCTCGTCAG GGACGCGAGC
    CGGTTCCATC GCTTCGAGAA TGGGGCCTGC TCCTGCAGAG ACTACTGGTG
    AAGAATTTGG TGTGCCTGGT GAAGGAAACA CAAATGGGAA CTCAAACTTT
    GGTGTGCCTG GTGAAGGAAA GACAAATGGG AATACAAGCT GGTTGAGATC
    TGCCGCGGAA CGTGATGTTG GCTACCGGCA AACCGTTGGA CAGCAAGACA
    GAGAAGCCGT CGAACCAGTG CCGTCCGATC TCGAGAGTGA GCAGGAAGAC
    GTTCGGCGAA CTGTCACTCA GAACCGGAGT TTAGGCTGGA AGCGCAAGCC
    GATGGAACAA TTCCGATCGG TAGAGGAGAC AAAAAAAAAA ATCAAAACAA
    AGGCCTGAAA TTTTGCATTT TTTACACGCC CCCTGATCTA ACAATGATCT
    CGTGCAGTCG TGTGCCGTTA GCTAAGTGTT GTCAGGTTCT TTGTGCAGGA
    TGGACATGGG CACATGGCTG CCGATAGCAT AAACATTTGA TAAAGAATGA
    CTTTAAGCTC GAT

    Gene models with high sequence identity

    1. AT3G11460.1 [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
      E-value: 2e-129; Score: 27.30

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SELENIUM-BINDING PROTEIN 2.1e-18
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2.1e-18
    HMMPanther SELENIUM-BINDING PROTEIN 2.2e-187
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2.2e-187
    HMMTigr Pentatricopeptide repeat 1.1
    HMMTigr Pentatricopeptide repeat 0.0027
    HMMTigr Pentatricopeptide repeat 0.00074
    HMMTigr Pentatricopeptide repeat 0.00029
    HMMTigr Pentatricopeptide repeat 0.19
    HMMTigr Pentatricopeptide repeat 0.019
    HMMPfam Pentatricopeptide repeat 0.00061
    HMMPfam Pentatricopeptide repeat 0.0000017
    HMMPfam Pentatricopeptide repeat 0.0019
    HMMPfam Pentatricopeptide repeat 0.000028
    HMMPfam Pentatricopeptide repeat 0.041
    HMMPfam Pentatricopeptide repeat 0.0013
    superfamily TPR-like 1.6e-28
    ProfileScan Pentatricopeptide repeat 9.306
    ProfileScan Pentatricopeptide repeat 9.734
    ProfileScan Pentatricopeptide repeat 7.837
    ProfileScan Pentatricopeptide repeat 6.544
    ProfileScan Pentatricopeptide repeat 7.805
    ProfileScan Pentatricopeptide repeat 7.728
    ProfileScan Pentatricopeptide repeat 5.568

    See the detailed result >

    AT3G11460.1

    Model type
    Protein coding
    Short Description
    Pentatricopeptide repeat (PPR) superfamily protein
    Computational Description
    Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G30700.1); Has 38316 Blast hits to 13864 proteins in 256 species: Archae - 0; Bacteria - 8; Metazoa - 61; Fungi - 80; Plants - 37599; Viruses - 0; Other Eukaryotes - 568 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR