K23526

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23526

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23526

Determination of introduced cDNA(s)

  • J013000N08 - Rice Full-length cDNAs - Original: J013000N08

    full reading [+] show sequence

    Nucleotide sequence: J013000N08 - full reading 
    GAGGCGGCAA TGGCCACCGA GCCTTCCACC TCCGCACCAG CCTCCCCCGC 
    CGCCGTCGCC GGCGGCGACG ACTCCCTCGA GCCATGGAGC GCGCGGGTGC 
    GCACCCTGAC GCGCCTCGGC CGGCACAGGG AGGCCCTTGC CCTCCTCCGC 
    CACGGCGACC CCTCGCCGCC GCCGCACGCC CTGGCGCTCC CGGCGGCGGT 
    GATCTCCTGC GCCAAGCTGC ATCTCGCCTC GGGCGTCGCC CAGATACACG 
    CGCTCGCGGC CAAGCGCGGC CTCCTCCCGT CCTCCGACGC CTACCTCCTC 
    TCCGCGCTGC TCTCCTCCTA CTCCCGCCTC CGCCTCCTCC CGCTCGCCCG 
    CCAGCTCCTC GACGAATTGC CCCTCGCGTC CACGCCGCCC GCCACGGCGC 
    GCACCGCGTT CAACTCCCTC ATCTCCGGGT GCGCGCTCCA CGGGGTCCCG 
    GCCGGCTGCT TCTCCCTCTT CCGCCGCATG CGCGTGGCCG CCGGCGTCCG 
    CTTCGACGCC GTCACGCTGC TGGCGCTCGT CCCCGTTGCT CCCCTGGGCA 
    TCGTGCCGCA GCTCCACGCC CTCGCGGCGC GATCGGGGCT CGCCGCGAAC 
    ACTTCCGTGG CCAACTGCCT CGTGTCTGTC TACGCGCGCG GCGGCGGCGG 
    CGGCGCCTCC CTTGCCCGCC AGGGTTTTCG AGGAGATGCC GCGGGCCTCC 
    CGCGACCTCG TGTCGTGGAA CGCGGTGATC TCCGCCCACG CGCAGAACGG 
    CCTCGCCGTG GAGGCCGTCG AGCTGTACCG GCGCATGCGT GGCCCGGAAG 
    GCGGCGGGGT GGAACCGGAC GCCGTGACGC TCGTCGGCGT CCTCTCCTCC 
    TGCGCGCACA CCGGCGCGCG CCGCGTGGGC CTTGACGTCG AGCGGTACGT 
    GCGGGATACA ATCCCGGGCT TCCGCGACAA CCTGCCGCTC TGCAACGCGC 
    TCATCAACTT CCACGCGCGC TGCGGCAGCT TGGCCCAGGC GCAGGAGCTG 
    TTCGACGAAA TGCCCGAGAG GAGCGTCGTC TCGTGGACGA CGCTGATCAT 
    CGGGTACGGC ATGCACGGAC AGGGCGACAT CGCCGTCGAC CTCTTCGAGA 
    CGATGGTGTC GGAAGCAACC GCGCCGGACA GCGTGGCCAT GGTCGGCCTT 
    CTGTCGGCGT GCAGCCACGC CGGCATGTAC GACGAAGGGC GCAAGTACTT 
    CTCAACAATG GAGCGCGATT ACTGCCTCCG GCCCAAACTG GAGCACTACA 
    CCTGCATGGT GGACCTCCTC GGACGAGCCG GCCGTCTCGA CGAAGCACGG 
    GAGCTCATCG CGTCGATGCC GATGGCGGCC GACGGCGCGG TCTGGGGCGC 
    GCTGCTCGGA GCCTGCAAGA TACACAAGAA CGTGGAGATG GGAGAAGAGG 
    CCTTCGAGCG CGTCGTCAGC CTCGAGCCGG CCAACGTGGG GTACTACGTG 
    CTCATGGCGA ACATCTACGC CGACGCCGGG CAGCTCGACG GCGTGGCGAA 
    GGTGCGGGCG GCGATGAGGC GGCGCGGGCT CAGGAAGGAG CCCGGGTGTA 
    GCTACGTCGA GCACAAGGGG AAGGTCCACC TGTTCATGGC CGACGACCAC 
    TCGCACCCGC AGGCGAGGAG GATCTACGAG CTCGTGGTCG AGCTGGAGCG 
    GATGGTGAAG GAGAAGACGG GTGGCGATGT GGTTGAGGAG CGCGCTGAGA 
    AGGCGGTAGC GGAGGCGGCG GCCGTGCCAT TGGTGGGGTT CCACAGCGAG 
    AAGCTGGCGG TGGCGTTCGG GTTGCTGAAC ACGGAGGCGG GAAGTGAGAT 
    CGTGGTGATC AAGAACCTGC GGGTGTGCGG GGACTGCCAC TCGTTTCTGA 
    AGACGATCTC GGAGTTGACA AATAGAGCGT TTCTCGTCAG GGACGCGAGC 
    CGGTTCCATC GCTTCGAGAA TGGGGCCTGC TCCTGCAGAG ACTACTGGTG 
    AAGAATTTGG TGTGCCTGGT GAAGGAAACA CAAATGGGAA CTCAAACTTT 
    GGTGTGCCTG GTGAAGGAAA GACAAATGGG AATACAAGCT GGTTGAGATC 
    TGCCGCGGAA CGTGATGTTG GCTACCGGCA AACCGTTGGA CAGCAAGACA 
    GAGAAGCCGT CGAACCAGTG CCGTCCGATC TCGAGAGTGA GCAGGAAGAC 
    GTTCGGCGAA CTGTCACTCA GAACCGGAGT TTAGGCTGGA AGCGCAAGCC 
    GATGGAACAA TTCCGATCGG TAGAGGAGAC AAAAAAAAAA ATCAAAACAA 
    AGGCCTGAAA TTTTGCATTT TTTACACGCC CCCTGATCTA ACAATGATCT 
    CGTGCAGTCG TGTGCCGTTA GCTAAGTGTT GTCAGGTTCT TTGTGCAGGA 
    TGGACATGGG CACATGGCTG CCGATAGCAT AAACATTTGA TAAAGAATGA 
    CTTTAAGCTC GAT

    Gene models with high sequence identity

    1. AT3G11460.1 [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
      E-value: 2e-129; Score: 27.30

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SELENIUM-BINDING PROTEIN 2.1e-18
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2.1e-18
    HMMPanther SELENIUM-BINDING PROTEIN 2.2e-187
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2.2e-187
    HMMTigr Pentatricopeptide repeat 1.1
    HMMTigr Pentatricopeptide repeat 0.0027
    HMMTigr Pentatricopeptide repeat 0.00074
    HMMTigr Pentatricopeptide repeat 0.00029
    HMMTigr Pentatricopeptide repeat 0.19
    HMMTigr Pentatricopeptide repeat 0.019
    HMMPfam Pentatricopeptide repeat 0.00061
    HMMPfam Pentatricopeptide repeat 1.7e-06
    HMMPfam Pentatricopeptide repeat 0.0019
    HMMPfam Pentatricopeptide repeat 2.8e-05
    HMMPfam Pentatricopeptide repeat 0.041
    HMMPfam Pentatricopeptide repeat 0.0013
    superfamily TPR-like 1.6e-28
    ProfileScan Pentatricopeptide repeat 9.306
    ProfileScan Pentatricopeptide repeat 9.734
    ProfileScan Pentatricopeptide repeat 7.837
    ProfileScan Pentatricopeptide repeat 6.544
    ProfileScan Pentatricopeptide repeat 7.805
    ProfileScan Pentatricopeptide repeat 7.728
    ProfileScan Pentatricopeptide repeat 5.568

    See the detailed result >

    AT3G11460.1

    Model type
    Protein coding
    Short Description
    Pentatricopeptide repeat (PPR) superfamily protein
    Computational Description
    Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G30700.1); Has 38316 Blast hits to 13864 proteins in 256 species: Archae - 0; Bacteria - 8; Metazoa - 61; Fungi - 80; Plants - 37599; Viruses - 0; Other Eukaryotes - 568 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR