K23535

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23535

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23535

Determination of introduced cDNA(s)

  • J013038G02 - Rice Full-length cDNAs - Original: J013038G02

    full reading [+] show sequence

    Nucleotide sequence: J013038G02 - full reading 
    GATATCTAGA AAAACAGAAA AAGAATATAA GGGGGAAGAC TTGGGCCGCC 
    GCTAACCCTA ACCCCTGGCG ACGGCGGCCG ATCGTCGTCG ACGAAGTCAG 
    GCGCGGAGGC TGCGACCGGA TTAGCCGGTC GCCCCTGGAT TTGGAGCTCC 
    CGTGTCCGTG TGGGGGCAAT GCTAGCGCGG GCGTTTGGCC TCGTGGGCAA 
    AACATGGAAG CGAACGCCGA CTATGTCCGT CGAGGCTTCC GCCTCGCCGC 
    GCCGCCGCTC CCAGATGCCA CAGCAGCAGC TTTGTCATCT CCACGGCAGC 
    ACGCCGTCAC AACGGCAAAA GTTCCCCGAA GAACAGCTCC CGGGAGGAGC 
    TCCGCCAATG CTGGACTATA TCTCCGAACA GAACTTAAGC ACCGTAGTAA 
    TGGCAACATG GAGAATTCAG CTGTTGCTGC TGTCGACTCT AATGGATAAC 
    CTTGCTCGCT TCTGAACTTC AATATTGAAC TAAGCTTTGT AAGGTTGGCA 
    TGCTAAATTA GTTGTTTACA TTCAGGGATA CTGTTGAGGG GAGTTTTGAC 
    CTGAGGTTTG CAGCACTGAA GAGCATTGGG GAGGATCGGG TCAACGATCG 
    TGAGCTTAAG TTACTGCTAA AGAAGAAACA TGCCCCCATT TGTTATGTTT 
    GGTGTGATCC ATGCCCCTGG ATGCACATTT CTCAGGTACA ATATTGAGAT 
    GTGGAAAGCA ACTGGCATGG CTCTTGATAA AGTAGATCTA GTCTGGTTGT 
    CAGATGAAAT ACGTCAACAT GGTGATGAGT ACTGGCCAAT TGTCATGGAT 
    ATTGCAAGGA CAAACAGTGT GCGTAGAATA AAAAGTACAT GCAGGTCCTC 
    TTATTACTGT TTACCTAGCA GATTTTGTGG GAGTAGAAAT TCTTATGCGA 
    TTGGAAAATT AAATGTTGAT GAGATTTTTT ACATTTGCTT GCAGTGTGCT 
    AGCATATTAT TTCAGAAGGC AGACATATGG CTGTTGGGAA TGGAACAGCA 
    TGATGCCAAC TTATTAGCTA GACAATATTA TAAGCATTTC AAAAAGAAGA 
    ATAAGGCAAT TGCTGTTTTG GACAATATGC TTCCTAATTT ATTACAATAC 
    CCTCAAATGG AGAACAGGAG GCATCCAGCT TGGGCTATCT TCATGGAAGA 
    TGATAAGGAG GATATATGTT TTAAAATGGA AAAAGCTTTC TGCCCTCCAA 
    AACTAGCAGA AGGCAATCCA TGTTTGGAGT ACATAAAATA TATCATCTTG 
    CCTTGGTTTG GAATGTTTGA GGTGGTCCAG AAGAAAGGGA ATGGTGGCAA 
    AAAGACTTTT CTGAGCATGG AGGAACTTAC AGCTGATTAT GAAAGTGGCG 
    CTCTGCATCC TGCTGATGTG AAGCTGGCCC TTGAAAAGTC ATTGAACGAG 
    ATATTGCAGC CTGTTCGTGA TCACTTTGGA AGGAATGGTG AAGCAAAGGA 
    TCTAGTGGAA GCTATCGGGG AATGCTACGG TGCTGACTGA TATTACATGT 
    TCACTCTTGG ACTTAGGAGT AGTGTTCTTA TCTTTGGCCA TGTAATGAAC 
    AAATCAATCC CTATCTATGA GCAGTCTTAG AGGTTCCTTT TGTGCCACAA 
    GGTCATCAGT TCAGTGCTTG CTCTTTCCTC GTGGGTGTGT TAGAAGGGTG 
    TCTTTTTTTT TCCTCATCAC AACCTTGTTT CTTGTATTTT TTACCTGCTA 
    TATGAATATG AAACCTCCCG CTGTCTCGTG CGGTTAGTTC CC

    Gene models with high sequence identity

    1. AT2G33840.1 [+] show detail - Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial
      E-value: 8e-65; Score: 245.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Aminoacyl-tRNA synthetase, class Ib 5e-21
    HMMPIR Tyrosine tRNA ligase, archaeal/eukaryotic 7.7e-114
    Gene3D Rossmann-like alpha/beta/alpha sandwich fold 2.9e-13
    Gene3D no description 1e-32
    superfamily Nucleotidylyl transferase 5.6e-41
    HMMPanther Tyrosyl-tRNA synthetase, class Ib, archaeal/eukaryotic cytosolic 4.9e-39
    HMMPanther ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHION 4.9e-39

    See the detailed result >

    AT2G33840.1

    Model type
    Protein coding
    Short Description
    Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial
    Computational Description
    Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; FUNCTIONS IN: tyrosine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, tRNA aminoacylation for protein translation, tyrosyl-tRNA aminoacylation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Tyrosine tRNA ligase, archaeal/eukaryotic (InterPro:IPR016485), Tyrosyl-tRNA synthetase, class Ib, archaeal/eukaryotic cytosolic (InterPro:IPR015624), Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (InterPro:IPR002307), Aminoacyl-tRNA synthetase, class Ib (InterPro:IPR002305); BEST Arabidopsis thaliana protein match is: Nucleotidylyl transferase superfamily protein (TAIR:AT1G28350.1); Has 5443 Blast hits to 5419 proteins in 1791 species: Archae - 389; Bacteria - 3121; Metazoa - 323; Fungi - 286; Plants - 124; Viruses - 5; Other Eukaryotes - 1195 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR