K23538

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23538

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23538

Determination of introduced cDNA(s)

  • J013074E04 - Rice Full-length cDNAs - Original: J013074E04

    full reading [+] show sequence

    Nucleotide sequence: J013074E04 - full reading
    GCCCCCCGGT TCTCGCCTCT CTCTCTCTCT CTCCTCTTCA ATTCTCTCTC 
    TACCTCCGCT GCGGAGCTCG CCGCGTAGCA ATGGAGGCGG GCGTGGGGCT
    GGCGCTGCAG TCGCGGGCGG CGGGGTTCGG CGGCTCCGAC CGCCGCCGGA
    GCGCGCTCTA CGGCGGCGAG GGGCGGGCGC GGATCGGGAG CTTGAGGGTC
    GCTGAGCCGG CGGTGGCGAA GGCCGCTGTG TGGGCTCGCG GGTCCAAGCC
    GGTCGCCCCG CTCCGTGCCA AGAAATCGTC CGGAGGTCAT GAAACATTGC
    ATAACTCGGT TGATGAAGCC CTCTTGCTAA AGAGAAAATC AGAAGAAGTT
    CTCTTCTATT TGAATGGACG GTGTATTTAC CTAGTTGGAA TGATGGGTTC
    TGGAAAAAGT ACTGTGGGAA AGATCATGTC TGAAGTTTTG GGTTATTCGT
    TCTTTGATAG TGATAAATTG GTCGAACAAG CTGTGGGCAT GCCTTCAGTC
    GCTCAAATTT TCAAGGTTCA TAGTGAAGCC TTCTTTAGGG ATAATGAGAG
    TAGTGTCTTG AGGGATTTGT CCTCAATGAA GCGATTAGTT GTTGCTACTG
    GAGGTGGTGC TGTTATCCGA CCAGTTAACT GGAAATACAT GAAGAAGGGC
    CTTGGACGCT CTTGCTAGGC GTATTGCTAA AGTGGGGACT GCCTCCCGTC
    CTCTTCTAGA TCAACCATCT GGTGATCCAT ACACAATGGT GACTACTTGG
    CCCATGAATT TATGCCATGC ATGAATATGA TATTATTTCA GATGTATTTT
    TTTAAATTTT TAATCAGTCA ATATAGGCTC ATTCATTCAA TGTAGAAATG
    AAAAACTGCA AGTATGATCC TGCACATCTG CACAACTGGT AGTGTAATTC
    TTTCATTTCA GTGCTAGTAT GAGTTGCTCA CTGGATTCTT CCTATCTTAG
    GCTTTTTCTA AACTCAGCAT GCTCGCGGAG CAAAGGGGCG ATGCTTATGC
    AAATGCTGAT GTGAGGGTTT CTCTTGAAGA GATTGCATCT AAACAGGGTC
    ATGATGATGT ATCGAAGCTA ACACCAACTG ACATTGCTAT TGAGTCGTTT
    CATAAGATCG AGAACTTTGT CATTGAACAT ACCGTTGACA ATCCGGTTGG
    TGACTCCCAG GCTGACTCAC GTGCTCAGAG GATACAGACC TTGTAGAATT
    TTGATCTTTT TTGTACCTTA GTGTTACCTT GTAGCGCTGT TGAGTTATTT
    GTTCGTTGTA CCGACAAGAT GATGAAAAGA ACCGGAAGTG TATTTTCCTT
    GTAAACTGTA AAGAAAAGGA ATAATGGAGC TAATCAGAAA ATCAGCGTTT
    GGTTGC

    Gene models with high sequence identity

    1. AT2G21940.4 [+] show detail - shikimate kinase 1
      E-value: 4e-38; Score: 27.30

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SHIKIMATE KINASE 3.1e-37
    HMMPanther SHIKIMATE KINASE 0.00000000000086
    superfamily P-loop containing nucleoside triphosphate hyd 4.3e-23
    PatternScan Shikimate kinase 0
    FPrintScan Shikimate kinase 2.3e-19
    FPrintScan Shikimate kinase 2.3e-19
    FPrintScan Shikimate kinase 2.3e-19
    FPrintScan Shikimate kinase 2.3e-19
    HMMPfam Shikimate kinase 2.5e-28
    Gene3D no description 4e-27

    See the detailed result >

    AT2G21940.4

    Model type
    Protein coding
    Short Description
    shikimate kinase 1
    Computational Description
    shikimate kinase 1 (SK1); FUNCTIONS IN: shikimate kinase activity, ATP binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623); BEST Arabidopsis thaliana protein match is: shikimate kinase 2 (TAIR:AT4G39540.2); Has 7757 Blast hits to 7757 proteins in 2385 species: Archae - 26; Bacteria - 5408; Metazoa - 44; Fungi - 134; Plants - 162; Viruses - 0; Other Eukaryotes - 1983 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR