K23603

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23603

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23603

Determination of introduced cDNA(s)

  • J023141H24 - Rice Full-length cDNAs - Original: J023141H24

    full reading [+] show sequence

    Nucleotide sequence: J023141H24 - full reading 
    GATGGACTAC TATCCGTGAA CAAGAAATGG ATGTCAACCA GCTCTGGTTA 
    CTGTGGGCAA CACTCGCCGT GTCACTGCTC TACTACATCA GCAACCGGAG 
    ACGCCGCGTG GGCGGCCGGC GACGATGTCC ACCTGGTCCC ATGCCGCTCC 
    CGCTCGTCGG CAACCTGCTC AACCTGCGCG GCCACCTCCC ACCCGCGCTC 
    GCGAGGCTAG CGCGCACGTA CGGCCCCGTG ATGATGCTAA AGATGGGCCT 
    CACCACCACC GTCGTCATCT CCTCCGGCGA CGCGGCGAGG GAGGCCTTCA 
    CGAAGCACGA CCGGCACCTC GCCGCGCGCA CCGTCCTGGA CGTCACTCGT 
    TCTCTCGACT TCGCCGACCG GTCCATGATA TGGCTGCCGA GCTCCGATAC 
    CGTCTGGAAG ACGCTCCGCG GCGTCACGGC GGCGAGCATC TTCTCGCCGC 
    GTGGCCTCGC CGCCCTGCGC GGCGTCCGCG AGAGCAAGGT GCGGGACCTG 
    GTGGGCTACT TCCGTGGGCG CGCCGGGGAG GTCGTGGACG TCCGCCACGC 
    CGTGTACGGC TGCATGCTCA GCCTCGTGTC GAGCGCGTTC TTCTCCGTCG 
    ACGTGGTCGA CCTGAGCGCC GAGTCCGAGA ACGAGTTCCG GCAGAGCATG 
    ACGTTCCTCA TGGAGGTGGT GTCGAAGACG AACGTCTCCG ATTTCTTCCC 
    TTTCCTCCGG CCGCTCGACT TGCAGGGATG GCGTCGCTTG ACCGAAAGGT 
    ATCTGGGCAG AGTCACCTGC TTCTTGGATG ACGTGATCGA CCGCCGTTTC 
    GCCGCCGACG CCTCGGCAAA CAGGCACGGC GACTTCTTGG ACTCCCTCCT 
    CGACCTCGTG TCCACCGGCA AGATCGTCGG CGAAAACGTG ACAACCATTT 
    TGCTCGACGT GTTCATAGCC GGGAGCGACA CGATCACGGC CACGGTGGAG 
    TGGGCGATGG CCGAGCTGCT CCGCAACCCA AGCGAAATGG CCAAGGTGCG 
    CGCCGAGATG GACGGCGCTC TCGGCGGCAA GAAAACCGTC GACGAGCCCG 
    ACATCGCGAG GCTGCCGTAC CTCCAGGCGG TCGTGAAAGA GGCGATGCGG 
    CTGCACCCGG CAGCGCCGCT GCTGTTGCCC CACCGGGCGG TGGAGGACGG 
    CGTGGAGGTC GGCGGCTACT GCGTGCCGAA GGGCTCGATG GTGATCTTCA 
    ACGTGTGGGC GATAATGCGC GACCCGGCGG CGTGGGAGAG GCCGGAGGAG 
    TTCATGCCGG AGCGGTTCAT CCGCCGGGGA GATGATGACG AGGTGGATTT 
    CTGGGGGAAG ACGTTCGAGT TCATCCCGTT CGGGTCCGGC CGGAGGGTGT 
    GCGCCGGCCT GCCGATGGCG GAACGTGTCG TGCCGTTCAT GCTGGCGTCG 
    CTGCTGCGCG CGTTCGAGTG GCGACTCCCC GACGGCGTGT CGGCCGAGGA 
    GTTGGACATG CGCCACAGGT TTACCATTGC CAACTTCCGT GCCATCCCTC 
    TCAAGGCCGT GCCCGTTGTG GTCAGCTAGT TGCTCTCTTT CACTGCATCA 
    ATGGTGAATT GTGGCGCGTA CGTCTCTCCA TTTGGCCCAC ATATGTCAAG 
    TTGGATATTA TAATTGAAGC TAGTGGTGTA AGTTGTTCAA TTTAACATTA 
    TCGTAATGAT AAAGATTTTA ATGATAAATA ATTATCTAAA TCT

    Gene models with high sequence identity

    1. AT2G45570.1 [+] show detail - cytochrome P450, family 76, subfamily C, polypeptide 2
      E-value: 2e-86; Score: 317.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Cytochrome P450 1.9e-119
    FPrintScan Cytochrome P450, E-class, group I 4.7e-47
    FPrintScan Cytochrome P450, E-class, group I 4.7e-47
    FPrintScan Cytochrome P450, E-class, group I 4.7e-47
    FPrintScan Cytochrome P450, E-class, group I 4.7e-47
    FPrintScan Cytochrome P450, E-class, group I 4.7e-47
    FPrintScan Cytochrome P450, E-class, group I 4.7e-47
    FPrintScan Cytochrome P450, E-class, group I 4.7e-47
    FPrintScan Cytochrome P450, E-class, group I 4.7e-47
    FPrintScan Cytochrome P450, C-terminal 1.5e-10
    FPrintScan Cytochrome P450, C-terminal 1.5e-10
    FPrintScan Cytochrome P450, C-terminal 1.5e-10
    HMMPanther CYTOCHROME P450 SUBFAMILY 76C 3.5e-205
    HMMPanther Cytochrome P450 3.5e-205
    HMMPfam Cytochrome P450 5e-92
    Gene3D Cytochrome P450 3.9e-113
    PatternScan Cytochrome P450, conserved site 0

    See the detailed result >

    AT2G45570.1

    Model type
    Protein coding
    Short Description
    cytochrome P450, family 76, subfamily C, polypeptide 2
    Curator Summary
    member of CYP76C
    Computational Description
    "cytochrome P450, family 76, subfamily C, polypeptide 2" (CYP76C2); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: stem, sepal, male gametophyte, carpel, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 76, subfamily C, polypeptide 4 (TAIR:AT2G45550.1); Has 34313 Blast hits to 34043 proteins in 1718 species: Archae - 48; Bacteria - 4021; Metazoa - 12101; Fungi - 7308; Plants - 9587; Viruses - 3; Other Eukaryotes - 1245 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR