K23611

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23611

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23611

Determination of introduced cDNA(s)

  • J033133D05 - Rice Full-length cDNAs - Original: J033133D05

    full reading [+] show sequence

    Nucleotide sequence: J033133D05 - full reading 
    GTGTTGGAGC CTTGGAGGCC CAAACACGAA GACCGGCCTC GGCCCAATTC 
    GGACTCTCTC CCCATCTCGA CGGCGGCGGC GGCGGCGGCG ATGGCGTCCA 
    CCGGCGTCAA GCTCATCGAC ATCGCCGTCA ACTTCACCGA TGGCATGTTC 
    AGGGGCATCT ACCACGGCAA GCAATGCCAC GCCGCCGACA TCCCCGCCGT 
    GCTCGCCCGC GCGTGGGCGG CCGGCGTCGA CCGCATCATC GTCACCGGAG 
    GCTCGCTGAA GGAGTCTAGG GAAGCGCTCG AGATCGCCGA GACCGACGGG 
    GGCTGTTCTG CACGGTGGGC GTGCACCCGA CGAGATGCGG GGAGTTTGAG 
    GAGAGTGGAG ACCCGGAAGG GCATTTCCAG GCGCTGCTGG CTCTGGCGAA 
    GGAAGGAATT GCGAAAGGCA AGGTTGTAGC AGTGGGAGAA TGTGGTCTGG 
    ATTATGATCG ACTTCACTTT TGTCCATCGG ATGTACAGAA GAAGTACTTC 
    AAGAAGCAAT TTGAATTGGC TGAAGCAGTA AAATTGCCAA TGTTTCTTCA 
    CATGCGGGCT GCTGGTGAAG ACTTCTGTGA GATTGTGTCA GAAAATCTGT 
    ATAGATTCCC TGGGGGTGTT ACACACTCCT TCACTGGAAC TGCAGAGGAC 
    CGTGATAAGC TTCTTTCCTT TGAAAAGATG TTTATAGGTA TTAATGGATG 
    CTCTCTGAAG ACTAGTGAAA ATCTTGAGGT TCTACAAGGT ATTCCTGCAG 
    AGAGGATGAT GATAGAGACA GACTCTCCAT ACTGTGATAT TAAAAATACT 
    CATGCTGGAA TCAAGTTCGT GAAGTCTGTC TGGCCATCCA AGAAGAAAGA 
    AAAGTACGAG CCGGATTCTA CAGTAAAAGG TCGCAATGAG CCCTGCTTAG 
    TCAGGCAAGT TCTTGAGGTT GTAGCTGGAT GCAAAGGAAT TGCTGACATT 
    GAAGGCTTAA GTAAAACTCT GTACCACAAC ACGTGCAGGC TCTTCTTCCC 
    TCAGGACCTG GATGCTTCTG CTGATGCACA GCTTGAGAGT GGTGCGTTTA 
    TTCAAAATAG CTGATGGGAC ATGACAGAGC GTTTGTTACT TTGATATTCA 
    CTTAACGATG TTTGCTACCT TTTTTTTTTT TTTTTGCTTG GTTAAAGATC 
    TTGTACTTCG ACAATTGCCA AATTGGCTTG CTATGAGAGT GTCGTTCATG 
    TTC

    Gene models with high sequence identity

    1. AT3G52390.1 [+] show detail - TatD related DNase
      E-value: 3e-143; Score: 111.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Deoxyribonuclease, TatD-related 3.7e-42
    HMMPfam Uncharacterised protein family WW domain-binding protein 1 9.2e-05
    Gene3D no description 8.7e-50
    HMMPanther Deoxyribonuclease, TatD 0.00028
    HMMPanther Deoxyribonuclease, TatD 1.8e-76
    PatternScan Deoxyribonuclease, TatD-related, conserved site 0
    HMMPIR Deoxyribonuclease, TatD Mg-dependent 2.6e-63
    superfamily Metallo-dependent hydrolases 4.1e-07
    superfamily Metallo-dependent hydrolases 8.8e-49

    See the detailed result >

    AT3G52390.1

    Model type
    Protein coding
    Short Description
    TatD related DNase
    Computational Description
    TatD related DNase; FUNCTIONS IN: endodeoxyribonuclease activity, producing 5'-phosphomonoesters, deoxyribonuclease activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Deoxyribonuclease, TatD Mg-dependent (InterPro:IPR012278), Deoxyribonuclease, TatD (InterPro:IPR015992), Deoxyribonuclease, TatD-related, conserved site (InterPro:IPR018228), Deoxyribonuclease, TatD-related (InterPro:IPR001130); BEST Arabidopsis thaliana protein match is: TatD related DNase (TAIR:AT3G03500.1); Has 9584 Blast hits to 9559 proteins in 2684 species: Archae - 131; Bacteria - 6791; Metazoa - 296; Fungi - 190; Plants - 99; Viruses - 0; Other Eukaryotes - 2077 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR