K23618

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23618

Determination of introduced cDNA(s)

J033071G08 - Rice Full-length cDNAs - Original: J033071G08

full reading [+] show sequence

GGCCAAATTT CATCTGTTTT TTTTTTCAAG TTCTTTAAGA AGTCCAAATC 
AAACTCTCCA AGTCACAAGT AGAAGTATGA ATCTTAAGAA AAAAAGAGTT 
TTAAGCATAC AAATATAAGC ATCAATCTGA TCTGCATTCG ACACTTTGGT 
CACTAGTTGA GTTGAGTTGA GAGTTGCTGA CAAAGCAAGC GGCTTTCCAT 
GTCTATCACC TCCGCTTCCC GCCGCGCCGG CGCCGCCGCG CTCCCCATCC 
TCCGACGAAT CGGCGGCGCG TTCCGCCGCC CCTTCTCGTC GGAGCCGGAC 
CCGGCATCCT CCCCGGGGTA CCACGTCGCC GGCGGGCCCA GCTTCATGCG 
CGGCGCGGTG TTCTGGGAGC CCGGCCGCCC TCTCACCCTC GAGGACTTCC 
GCATGCCGCG CCCCAAGGCC GGCGAGCTCC TCATCAAGAC CAAAGCTTGT 
GGAGTTTGCC ACTCCGATCT CCATGTTCTC AAGGGTGAGC TCCCATTCTC 
CAGCCCCTGC GTTGTTGGGC ATGAGATCAC TGGGGAGGTT GTTGACCATG 
GTACTCACAC CCCTGCTGAG ATCATCAACA GGTTCCCAGT TGGCAGTCAT 
GTTGTGGGTG CCTTCATAAT GCCCTGTGGG AATTGCTTCT ACTGTGTTAA 
GGGCCAAGAA GATCTGTGTG AGTCTTTCTT TGCATACAAC CGTGCTAAAG 
GAACGCTATA CGATGGTCAA ACCCGATTAT TCCTTCGTAG CAATGGAAAG 
CCAGTGTACA TGTATAGTAT GGGTGGGCTT GCAGAATATT GCGTTGTGCC 
AGCCAACGCA CTAGCAGTTC TTCCCAACTC TTTGCCATAC ACAGAGTCGG 
CGATTCTAGG ATGTGCCGTG TTCACTGCAT ACGGCGCCCT GAGGCATGCT 
GCTGAAATGC GTGCTGGGGA TTCAGTAGCT GTGATTGGAG TCGGAGGGGT 
TGGGTCAAGC TGTTTACAGA TAGCCAAAGC CTTTGGAGCT TCCGAAGTCA 
TTGCAGTGGA TGTTCTTGAT GAGAAACTCC AGAATGCTAG AACACTTGGA 
GCAACCCATA CTGTAAATGC TGCAAAAGAA GATGCAGTTG AAAAGATTAA 
GGAAATTACT GATGGGAGGG GTGTGGATGT AGCTGTGGAA GCACTTGGTA 
AGGCATTGAC ATTTTCTCAG TGCGCCAAAA GTGTACGAGA TGGAGGCAAA 
GCTGTTATGA TTGGCCTTGC TGCCACAAAT GTGATGGGGG AGGTGGATAT 
AACCCGTCTT GTTCGCCGAC AGGTGAAGAT CATTGGGTCG TATGGTGCAA 
GGGCCAGGCA AGATCTTCCT CAGATAGTCA AGCTTGCAGA GAGTGGGGCC 
TTCAATCTTA AGAACACCAT ATCAAGGAAA TGCAAGTTTG AAGAGGCGAA 
CAGCGCCTAC GAGGATCTTG ACCGTGGCAA GATCGTTGGG CGAGCCGTAG 
TTGAGATCAT GTCGTAGTGA TGAGATAATT CTGTGGTTCA TAGCCTGGGA 
TCCCACTCTG GGTCAATGAA ATAAGTAGGC TGTGACACTA CATATTCCAT 
GAACAACCTC ACTCCCTGAT TTGTGTTAAG ATGTCTGAAA TTGTTGATGT 
TGAACTGCAG GGAGATGATT AAATCAAGTG TGATTTCAGG TGTC

Gene models with high sequence identity

AT5G63620.1 [+] show detail - GroES-like zinc-binding alcohol dehydrogenase family protein
E-value: 1e-161; Score: 566.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	ZINC-TYPE ALCOHOL DEHYDROGENASE-RELATED	1.9e-94
HMMPanther	Alcohol dehydrogenase superfamily, zinc-containing	1.9e-94
HMMPfam	Alcohol dehydrogenase, zinc-binding	1e-30
HMMPfam	Alcohol dehydrogenase GroES-like	1.3e-27
Gene3D	no description	2.5e-61
superfamily	GroES-like	1.8e-55
superfamily	NAD(P)-binding domain	3e-46
superfamily	GroES-like	3.6e-06
HMMSmart	Polyketide synthase, enoylreductase	1.7e-07

See the detailed result >

AT5G63620.1

Model type: Protein coding
Short Description: GroES-like zinc-binding alcohol dehydrogenase family protein
Computational Description: GroES-like zinc-binding alcohol dehydrogenase family protein; FUNCTIONS IN: cobalt ion binding, zinc ion binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding dehydrogenase family protein (TAIR:AT1G64710.1); Has 51624 Blast hits to 51478 proteins in 3352 species: Archae - 890; Bacteria - 33556; Metazoa - 1876; Fungi - 3906; Plants - 3943; Viruses - 3; Other Eukaryotes - 7450 (source: NCBI BLink).
Link: InterPro Scan - TAIR