K23624

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23624

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23624

Determination of introduced cDNA(s)

  • J033136G21 - Rice Full-length cDNAs - Original: J033136G21

    full reading [+] show sequence

    Nucleotide sequence: J033136G21 - full reading 
    GGAAGTCGCC CCCTCGCCTC CATCTCTCTC ATCTGCCCTC CTCGACTCGA 
    CTCGACTCCC CTCCGCCGCC GCCGCCGCCA TCTTCCTCCT CCACCAGACC 
    ACCACCACCA CCAACAACAA CTCGTCGTCG CGTCTGCCTA GCTAGGGTTT 
    CCCTTCTCTA CCCAACCCTA GGAGGAAGAT GAGCCGCAGC CTTGGTATCC 
    CAGTGAAGCT GCTGCACGAG GCGGCGGGGC ACGTGGTGAC CGTGGAGCTC 
    AAGACCGGCG AGGTGTACCG CGGCTCCATG GTCGAGTGCG AGGACAACTG 
    GAACTGCCAG CTCGACAACA TCACCTTCAC CGCCAAGGAC GGCAAGGTCT 
    CCCAGCTGGA GCACGTCTTC ATCAGAGGAA GCAGGGTCAG GTTCATGATC 
    ATACCCGACA TGCTCAAGAA CGCCCCCATG TTCAAGCGCC TCGAGGCTAG 
    GATTAGGGGT AAAGGCTCAG CTATTGGTGT TGGCCGTGGC CGTGCCGTTG 
    CTATGCGTGC TCGGGCTGCT GCTGGTCGTG GTGGTGGTCC AGTTGGACGG 
    GGTGGTGCAC CTCCTGTGAG GCGGTAGATT TACGGGCAGC TCATTGTATG 
    CTGTTATGAT ATGGAGGAAG TCCAGGGAGT CTTTGTGTTC ATGATCCAAA 
    ACGTTGGTTC AGCAGCCAGA GTGCATGTGA GCTAAGCTTA TGTACCTCCA 
    TCCAGTTTAG TTTGCCTGTG TGCAGAATGG ATGGATGCAT GCCGGTGGTG 
    TTAACTCGTA AGCATGATGT ATTGCAGCGA ACTTTAGTAG CTCGGCTCAA 
    GTTTTCATAG GTGGGGCAGC GTTTTCATGT ATGTAGACTA GTGACTCTTG 
    ACTTGTTTCG TTATTAATCC ACTGTACCCT GCTGCCCGTT GATATGAATG 
    AATATTGCTG C

    Gene models with high sequence identity

    1. AT1G20580.1 [+] show detail - Small nuclear ribonucleoprotein family protein
      E-value: 1e-45; Score: 180.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Like-Sm ribonucleoprotein (LSM)-related domain 2.9e-29
    HMMPanther SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3 2.2e-70
    HMMPanther SMALL NUCLEAR RIBONUCLEOPROTEIN SM 2.2e-70
    Gene3D no description 1.1e-24
    HMMPfam Like-Sm ribonucleoprotein (LSM) domain 1.7e-14
    HMMSmart Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type 4.3e-16

    See the detailed result >

    AT1G20580.1

    Model type
    Protein coding
    Short Description
    Small nuclear ribonucleoprotein family protein
    Computational Description
    Small nuclear ribonucleoprotein family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: snRNP core protein SMD3 (TAIR:AT1G76300.1); Has 1253 Blast hits to 1253 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 480; Fungi - 336; Plants - 223; Viruses - 0; Other Eukaryotes - 214 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR