K23634

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23634

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23634

Determination of introduced cDNA(s)

  • J023091E23 - Rice Full-length cDNAs - Original: J023091E23

    full reading [+] show sequence

    Nucleotide sequence: J023091E23 - full reading 
    GATAGCATTT GCGTCCTCGC TCGATCGATA TCGGCCTCTA CCACCACTCT 
    CTCGAAATAT TAGATATATA GTTGCAATTT GTATCATTAA CATGTCGATC 
    GAAGCAGGTG TTACGGCGAC TGCACCCACC GTGTCGGCCA TCGTCCTGAC 
    GGCGACGGTG GGGTGCCACC TTCTCAAGAT CAGCGGCTAC TCGCAGACAA 
    GGCTGGTCGA TAATGGCGAA CGCGTCGAGT CGGCCAAGTT CAAGGCGGCC 
    GGTCACACCT GGCGCATTGT CTTCTACCCC AACGGCAAGT ACAGCATGGA 
    CCATGGCGCC TTCTCCTTCT ACCTCAAGCT CATCGACAGG TCCAAGGGCG 
    TGGATGCCGA GATCCAATTC AGCCTGCTGC CGCGGCATGG CGCGGACAGC 
    GGTACGCTCC CGTACAGCAA ACCGGAGATC ATGCACACGT TCGGGAGCGC 
    GCGCCGCAAC AGCAAGTGCG GGTTCAACTG GTTCATCAGC AGGGACGAGA 
    TGGAGACGCT GCAGAACAAG TATGTCGGGG AGGATGACGA CTCCATCATC 
    CTCTGTTGCG ACATCAAGGT GGTGAACAAA CCGGCCATCC ATCGCATTGG 
    CCTGAACGAC CTAGGGGTGT TTTGCCCCTG CGATGACGAC ACCTGCAAGC 
    GCCTCCACAA GAGGTCGCTG CAGGCAGCGT CTGATATAGC TATGGAGTCT 
    CAGCCATGTC TCGGTATCAA GGGGGGGTTC AAAAGGCTTT TCTCATACTT 
    TCTAGCCTAA TTAGCACAGT TTAATTTGTT CCAAGTCATG CCTTAGTACG 
    TACGTACATC TTGATAACGC ATGGTGTCCA TGTTCGGCGA ATCAATTTCT 
    TTTAGCAGTT AATTCATTTA TTAGGCTTTT ATAAATTCAC TGGAATGGTA 
    TTATTATATG TATTAGCTAG TAATTTATTT TCATTAATAA TAAAGATGTT 
    TGTTTCCAGA AAGAAAAGAG TACTAAATG

    Gene models with high sequence identity

    1. AT3G03740.1 [+] show detail - BTB-POZ and MATH domain 4
      E-value: 8e-09; Score: 58.20

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan MATH 13.436
    HMMPfam MATH 1.7e-06
    superfamily TRAF-like 1.6e-18

    See the detailed result >

    AT3G03740.1

    Model type
    Protein coding
    Short Description
    BTB-POZ and MATH domain 4
    Computational Description
    BTB-POZ and MATH domain 4 (BPM4); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 5 (TAIR:AT5G21010.1); Has 5789 Blast hits to 5682 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 3860; Fungi - 138; Plants - 1466; Viruses - 48; Other Eukaryotes - 277 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR