K23635

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23635

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased length (PATO:0000573)
    (Rosette leaf::Shape::long)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23635

Determination of introduced cDNA(s)

  • J033117P13 - Rice Full-length cDNAs - Original: J033117P13

    full reading [+] show sequence

    Nucleotide sequence: J033117P13 - full reading 
    GATTTCAAAT CCACACTCCG CCTCCCCTCT CCGGCCGCCG CCGGCGAGAT 
    GGATCTCTCC GCCACCCCGT CCAGATCCAA ATCCGGCCTC AGATCCTCCC 
    CGAGGAAGCC CGTCGCCGCC CCCGCCGTGG CCCAGATGGA CCTCTCCACC 
    CCGTCCAAGC CGACCCCCAG GCGGAAGCCC AAGGCGCCGC CGGTGGCGGC 
    TCCGATGTCC CCCGTGACCC CGTCCTCCGT CCGCCGCTCC TCCCGCCTCC 
    TCGAGACGCC GACCAAGGTA ACTTCCGAGA CCCCCGTGAA GCCCACCCCA 
    ACCCCGAAGC GGAAGCGCGC CGCGCCGTCG CCGTCGCCGA AGACGCCGAC 
    CCAGTCCGAG CCCAAGCGGC AGCGGCAGAG GCAGAGGCAG AGGCAGCAGC 
    CGAAGAAGCC GAAGAAGAGG GCGTACTACC GGAAGGTGGT GTACGACGGC 
    GGGGAGTTCG CCGCCGGGGA CGACGTGTAC GTGAAGCGGC GGGATGGCGC 
    GGAGTCCGAC GCGGAGGACC CGGAGGCGGA GGAGTGCCGC GTGTGCTTCC 
    GCGCCGGCGC CGCGGTGATG GTGGAGTGCG ACGTGTGCCT CGGCGGGTTC 
    CACCTGCGGT GCGTGCGCCC GCCGCTGCGG CGCGTGCCGG AGGGGGACTG 
    GGCGTGCCCC TACTGCGAGG CCGAGCGCGC GGGGAAGGCC ATCGAGAGGC 
    CCAAGCCGCC GGAGGGGAAG CGCATCGTGA GGACCGCCAA AGAGAAGCTT 
    CTCTCCAGTG ATTTGTGGGC TGCACGAATC GAGAGTTTAT GGAGGGAGCC 
    AGATGGAATA TTCTGGGCAA AGGTAAGATG GTATATTATC CCTGAAGAGA 
    CTGCAGCAGG AAGGCAGCCA CATAATTTGC GTAGGGAGCT GTACCGCACC 
    AATGATCTTG CAGACATTGA GATGGAAACA ATTCTTAGAC ATTGTTATGT 
    CATGAGCCCC AAAGAATTTA AGGATGCTAG TGATCAAGGA GATGACGTAT 
    TCTACTGTGA ATATGAATAT GACATACACT GGCATAATTT TAAGCGTCTG 
    GCAGACATCG ATGATGAACC TGAGACAAAG GAAGATCCTG GCGACGAGCC 
    ATACAATGCT GGTAATGATT ATGTCAGTGA CTCGGATGAA GATTCTGAAT 
    ATGATGAGGA GGAAGAACCT ACTAAATGTA GTTCTGCTAG AACACATCAA 
    TCACATGCGT TGGCTGCGAA TCTGCGGAAA GGGAGGACAT ATGGCCTACA 
    AAAAATTGGG ATCCGTAAAA TTCCTGAACA TGTCCGGTGT CATCAAAAGA 
    CCAATCTGGA GAAGGCAAAA GCAACCCTGT TATTGGCAAC TCTTCCTAAG 
    TCGTTACCTT GTAGGGATAA AGAAATGGAG GAGATATCTG CATTTGTGAA 
    GGATGCAATT TGCAATGATC AATGTCTAGG ACGCTGCCTT TATATTCATG 
    GTGTACCAGG CACTGGCAAG ACTATGAGTG TACTTGCAGT TATGAGGAGG 
    CTAAGATCCG AGCTTGATTC TGGGAATCTG AGGCCTTATT CTTTCATAGA 
    GATTAATGGT CTTAAATTAG CTTCTCCAGA GAATATCTAC AAGGTTATAT 
    ATGAACAGTT GAGTGGGCAT AGGGTAGGGT GGAAAAAAGC CCTTCATTAT 
    TTAACCGAGC ACTTTTCAGG TGGCACTAAA ATTGGCAAAC AAGCAAACCA 
    GCCAATTATT TTGCTCATCG ATGAGCTTGA TCTTCTTTTG ACGAGAAATC 
    AGTCGGTGCT GTATAACATT CTTGACTGGC CCACCAGGCC AAATTCAAAC 
    CTAGTTGTCA TAGGTATAGC GAACACAATG GATCTTCCTG AAAAGTTATT 
    GCCTCGTATT TCAAGTCGGA TGGGTATCCA ACGACTGTGT TTTGGCCCAT 
    ATAATTATCG GCAACTGCAG GAGATCATTA CAAGCCGTCT AAAGGGCATT 
    GATGCCTTTG AAGACCAAGC TATTGAATTT GCTTCTAGAA AGGTAGCTGC 
    TATGTCTGGT GATGCAAGGC GAGCCTTAGA AATATGTAGA CGTGCAGCAG 
    AGTTTGCAGA TTACCGCGTT AAACAATCTG GGCACACTTC TGTGAATAGA 
    GGAAAAAATG TTGTTTGCAT GGGTGACATA GAAGCTGCTA TTCAGGAAGT 
    CTTTCAGGCA CCACATATTC AAGTAATGAA GAACTGCCCA AAATTTGGAA 
    AGATTATATT GGTCGCTATG GTTCATGAAT TATACAGAAG TGGGCTAGGT 
    GAAGTGATGT TCGATAAGCT GGCAGCAACT GTCCTCTCTT GGTGCCATGT 
    CAACAGAGAA TTATTGCCTG GCTATGATAC TCTTCTGAAA ATCTGTTGCA 
    AGCTTGGTGA AGGTAAGATA ATTCTCTGCG AGGAAGGCAC TAAGCACAAG 
    TTGCAGAAGC TTCAGCTTAA CTATCCAAGT GACGATGTAA CTTTTGCCCT 
    GAAGGAATCC CCAGATATTC CATGGTTGTC CAAGTACCTG TGAAGTTTAC 
    ACTTGCAGCG GTTGTACTTT CCCAGCATTT CATTCATCTA CTCCTGGAGT 
    TGGAGAGCAA CGATCGCAAC TACTTGCCCT TGATCAGCAA ATCTCGGAAT 
    TTATGTGGGT CCAATTGTTC ATCTTCCAAA AGATATCGAC TCGAAGGATG 
    CCGCTGCAAC AAAATGTAAA TGCAGTGTCG CACCAGGACT GTAACATATG 
    TATGATTCGA AGGAGATTGT AGGTCGCCAT TTTATTTTCG CCAATCTGTT 
    GTTACCCT

    Gene models with high sequence identity

    1. AT4G14700.1 [+] show detail - origin recognition complex 1
      E-value: 0; Score: 819.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Zinc finger, PHD-type, conserved site 0
    HMMPanther Origin recognition complex, subunit 1 4.8e-191
    HMMPanther ORIGIN OF REPLICATION BINDING PROTEIN 4.8e-191
    ProfileScan Zinc finger, PHD-finger 9.615
    ProfileScan Bromo adjacent homology (BAH) domain 19.707
    HMMPfam ATPase, AAA-type, core 1.3e-16
    HMMPfam Bromo adjacent homology (BAH) domain 2e-16
    HMMPfam Zinc finger, PHD-finger 0.000000028
    superfamily P-loop containing nucleoside triphosphate hyd 5.8e-41
    superfamily Zinc finger, FYVE/PHD-type 0.00000000000001
    Gene3D no description 0.00000000000037
    Gene3D no description 3.1e-32
    HMMSmart Bromo adjacent homology (BAH) domain 0.0000000000028
    HMMSmart Zinc finger, PHD-type 0.000000027
    HMMSmart ATPase, AAA+ type, core 0.00000015
    Coil coiled-coil 0

    See the detailed result >

    AT4G14700.1

    Model type
    Protein coding
    Short Description
    origin recognition complex 1
    Curator Summary
    Encodes origin of replication complex 1a subunit.The protein contains a PHD domain,binds methylated DNA and appears to function as a transcriptional activator.
    Computational Description
    origin recognition complex 1 (ORC1A); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Origin recognition complex, subunit 1 (InterPro:IPR020793), ATPase, AAA+ type, core (InterPro:IPR003593), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: origin of replication complex 1B (TAIR:AT4G12620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR