K23642

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23642

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23642

Determination of introduced cDNA(s)

  • J033125I19 - Rice Full-length cDNAs - Original: J033125I19

    full reading [+] show sequence

    Nucleotide sequence: J033125I19 - full reading 
    GACATTTTGC AGTCTCCTCT CCTCCTCCGC TCGAGCGAGT GAGTCCCGAC 
    CACGTCGCTG CCCTCGCCTC ACCGCCGGCC AACCGCCGTG ACGAGAGATC 
    GAGCAGGGCG GGGCATGGAC GAGCCTTCGC CGCGCGGAGG TGGGTGCGCC 
    GGGGAGCCGC CCCGCATCCG GAGGTTGGAG GAGTCGGTGG TGAACCGCAT 
    CGCGGCGGGG GAGGTGATCC AGCGGCCGTC GTCGGCGGTG AAGGAGCTCA 
    TCGAGAACAG CCTCGACGCT GGCGCCTCCA GCGTCTCCGT TGCGGTGAAG 
    GACGGTGGCC TCAAGCTCAT CCAGGTCTCC GATGACGGCC ATGGCATCAG 
    GTTTGAGGAT TTGGCAATAT TGTGCGAAAG GCATACTACC TCAAAGTTAT 
    CTGCATACGA GGATCTGCAG ACCATAAAAT CGATGGGGTT CAGAGGGGAG 
    GCTTTGGCTA GTATGACTTA TGTTGGCCAT GTTACCGTGA CAACGATAAC 
    AGAAGGCCAA TTGCACGGCT ACAGGGTTTC TTACAGAGAT GGTGTAATGG 
    AGAATGAGCC TAAGCCTTGC GCTGCGGTGA AAGGAACTCA AGTCATGGTT 
    GAAAATCTAT TTTACAACAT GGTAGCCCGC AAGAAAACAT TGCAGAACTC 
    CAATGATGAC TACCCCAAGA TCGTAGACTT CATCAGTCGG TTTGCAGTCC 
    ATCACATCAA CGTTACCTTC TCTTGCAGAA AGCATGGAGC CAATAGAGCA 
    GATGTTCATA GTGCAAGTAC ATCCTCAAGG TTAGATGCTA TCAGGAGTGT 
    CTATGGGGCT TCTGTCGTTC GTGATCTCAT AGAAATAAAG GTTTCATATG 
    AGGATGCTGC AGATTCAATC TTCAAGATGG ATGGTTACAT CTCAAATGCA 
    AATTATGTGG CAAAGAAGAT TACAATGATT CTTTTCATAA ATGATAGGCT 
    TGTAGACTGT ACTGCTTTGA AAAGAGCTAT TGAATTTGTG TACTCTGCAA 
    CATTGCCTCA AGCATCCAAA CCTTTCATAT ACATGTCCAT ACATCTTCCA 
    TCAGAACACG TGGATGTTAA TATACACCCA ACCAAGAAAG AGGTTAGCCT 
    TTTGAATCAA GAGCGTATTA TTGAAACAAT AAGAAATGCT ATTGAGGAAA 
    AACTGATGAA TTCTAATACA ACCAGGATAT TCCAAACTCA GGCATTAAAC 
    TTATCAGGGA TTGCTCAAGC TAACCCACAA AAGGATAAGG TTTCTGAGGC 
    CAGTATGGGT TCTGGAACAA AATCTCAAAA AATTCCTGTG AGCCAAATGG 
    TCAGAACAGA TCCACGCAAT CCATCTGGAA GATTGCACAC CTACTGGCAC 
    GGGCAATCTT CAAATCTTGA AAAGAAATTT GATCTTGTAT CTGTAAGAAA 
    TGTTGTAAGA TCAAGGAGAA ACCAAAAAGA TGCTGGTGAT TTGTCAAGCC 
    GTCATGAGCT CCTTGTGGAA ATAGATTCTA GCTTCCATCC TGGCCTTTTG 
    GACATTGTCA AGAACTGCAC ATATGTTGGA CTTGCCGATG AAGCCTTTGC 
    TTTGATACAA CACAATACCC GCTTATACCT TGTAAATGTG GTAAATATTA 
    GTAAAGAACT TATGTACCAG CAAGCTTTGT GCCGTTTTGG GAACTTCAAT 
    GCTATTCAGC TCAGTGAACC AGCTCCACTT CAGGAGTTGC TGGTGATGGC 
    ACTGAAAGAC GATGAATTGA TGAGTGATGA AAAGGATGAT GAGAAACTGG 
    AGATTGCAGA AGTAAACACT GAGATACTAA AAGAAAATGC TGAGATGATT 
    AATGAGTACT TTTCTATTCA CATTGATCAA GATGGCAAAT TGACAAGACT 
    TCCTGTTGTA CTGGACCAGT ACACCCCTGA TATGGACCGT CTTCCAGAAT 
    TTGTGTTGGC TTTAGGAAAT GATGTTACTT GGGATGACGA GAAAGAGTGC 
    TTCAGAACAG TAGCTTCTGC TGTAGGAAAC TTCTATGCAC TTCATCCCCC 
    AATCCTTCCA AATCCATCTG GGAATGGCAT TCATTTATAC AAGAAAAATA 
    GAGATTCAAT GGCTGATGAA CATGCTGAGA ATGATCTAAT ATCAGATGAA 
    AATGACGTTG ATCAAGAACT TCTTGCGGAA GCAGAAGCAG CATGGGCCCA 
    ACGTGAGTGG ACCATTCAGC ATGTCTTGTT TCCATCCATG CGACTTTTCC 
    TCAAGCCCCC GAAGTCAATG GCAACAGATG GAACGTTTGT GCAGGTTGCT 
    TCCTTGGAGA AACTCTACAA GATTTTTGAA AGGTGTTAGC TCATAAGTGA 
    GAAAATGAAG GCAGAGTAAG ATCATGATTC ATGGAGTGTT TTTGAAAATG 
    TGTATAATTT CACCGTATTA TGTACTTTGA TAGTGTCTGT AGAAACTGAA 
    GAAAGAAAGA TGGCTTTACT TCTGAATTGA AAGTTAACGA TGCCAGCAAT 
    TGTATATTCT GATCAAACAT TGGCGTCTAC TACTCTACTA GCAAGTGATC 
    TTCCTTAGCT CCAGGTCGAC AAGAATCAAG AATGTGTGTG TTGTACCCAA 
    TTTATTTAGC CAAAATGAAA AGGTATATTT TCTAAGTTCA AAAATTCAAA 
    TC

    Gene models with high sequence identity

    1. AT4G09140.1 [+] show detail - MUTL-homologue 1
      E-value: 0; Score: 917.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam DNA mismatch repair protein, C-terminal 9.9e-31
    HMMPfam ATPase-like, ATP-binding domain 0.000000006
    HMMTigr DNA mismatch repair protein, N-terminal 2e-118
    superfamily ATPase-like, ATP-binding domain 9.7e-50
    superfamily Ribosomal protein S5 domain 2-type fold 7.5e-33
    PatternScan DNA mismatch repair, conserved site 0
    HMMPanther DNA mismatch repair protein Mlh1 4.4e-239
    HMMPanther DNA mismatch repair protein 4.4e-239
    Coil coiled-coil 0
    Gene3D ATPase-like, ATP-binding domain 1.9e-66
    Gene3D Ribosomal protein S5 domain 2-type fold, subgroup 1.2e-25

    See the detailed result >

    AT4G09140.1

    Model type
    Protein coding
    Short Description
    MUTL-homologue 1
    Curator Summary
    Encodes a protein with similarity to Mut1 DNA mismatch repair protein, from E.coli. The protein is expressed during prophase I of meiosis, colocalizes with MLH3 throughout pachytene and is dependent on MLH3 for proper localization.
    Computational Description
    MUTL-homologue 1 (MLH1); FUNCTIONS IN: protein binding, bridging; INVOLVED IN: in 6 processes; LOCATED IN: nuclear chromatin; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein Mlh1 (InterPro:IPR011186), DNA mismatch repair, conserved site (InterPro:IPR014762), ATPase-like, ATP-binding domain (InterPro:IPR003594), DNA mismatch repair protein, C-terminal (InterPro:IPR013507), DNA mismatch repair protein, N-terminal (InterPro:IPR014763), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), DNA mismatch repair protein (InterPro:IPR002099), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721); BEST Arabidopsis thaliana protein match is: DNA mismatch repair protein, putative (TAIR:AT4G02460.1); Has 6802 Blast hits to 6727 proteins in 2342 species: Archae - 68; Bacteria - 4480; Metazoa - 469; Fungi - 496; Plants - 114; Viruses - 0; Other Eukaryotes - 1175 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR