K23645

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23645

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23645

Determination of introduced cDNA(s)

  • J013156J19 - Rice Full-length cDNAs - Original: J013156J19

    full reading [+] show sequence

    Nucleotide sequence: J013156J19 - full reading
    GGCTGCGTCT CCTCGAGCAG AGCAGAGCAG CGGCGTCGCC GGCGTTGCTG 
    CTCCCGCGCC GCCGCATCCT CGCTCGCCGG TGACGATCCG GAAGATTCTC
    TCTCTGTGCC TTGAATAAAC CCTCTTAAAC CCCCCATGTC ACGCGAGCCT
    GCGGCAGCGG CGGAGGCGGA GGACGTCGTG GCCCGTCTCG GCACCGACGA
    GGCGACTGGG CTGACGGAGG AGGAGGCGGC GCGCCGCCTC AAGCTGTACG
    GGCCTAACCT CGTGGTCGCC CATCACCCCC AGGTGGGTGG CAAGCTTCTT
    GCTACACTAA AGTGCATCGT CCTGCTCTGG GGATGGGATC ACTCCTTCAC
    CGAGTACATT AAATACGAGA TTGGATGGGA GTCATGGGAG CATCTTATCT
    TCCCCTGCTC CAGGGAGATG TTATGTGTCA TGTTCATCAA TTTCTCGTCA
    TGGGCGGCAT TGGCGGCTGC ACTTGTGTCC CTTGCCCTTA ACTCAGCTGG
    TCAGACAACC TATGAACTGA TCGTTATCGT CTCCTTACTT GTGGGAAGCC
    TGTGTGCATG CTGTGTTGCC AAGCTCCTTG CCAATCGTGC TAAGGCACCG
    CTGGAAGCTA AAGCTTTTGC GCGAAGGACC AAGGTTCTGA GGGATGGAAT
    ATGGAAACAT GAGGATGCGA CCAATCTTGT CCCTGGGGAT ATCATATATC
    TCAAGTGTGG TGATATTGTG CCAGCCAATG CTTTTGTCCT CAACATGGCA
    CAGATCGACA CCAAAACCAT CCGTCATGAA AGGAGTGTTA ACTATGTGAT
    GGGCTCCCTT ATATACTATG GCTGGGCTGT CTCCTGTGGC GAAGGGACTG
    CTGTTGTTAC TGTGACAGGC AATAACATCC CCATGAGCAC TCTGAAACAG
    CTTTATCCAA AACGATTCTC TCGGCCTGGG CAGCTTAGGA AGGGTGTCAT
    GGCTGCTGCC ACTTTTTGCT TCTGCTTAGT ACTTGTTGGC ATCACAAGTG
    AGGCTCTTGT TAAATTCTTT TTCCATCAAA GCATAGGCAC GCTGCACAGT
    GGCCACTTTA TGCCACTTAT TGGTCTAATA CCAATGTCGA TTCCTGCTGT
    GCTCTACCTG GCATTGGCAT TGGACTCTCA GAGGCTTTCC AAATTGGGGG
    TTGCCAGCCG GGGAACTTTT GCTCTTGAAG ACTTGGCTAG CATGGATGCT
    ATGCTCTTCA ACATGACTGG CACTTTGACA TGCAACAAGC CCTATTTTGA
    CAAGGACAAG ATTGAAGTGC TTACAGAAGG TATTGATAAA GATCATGCTG
    TCCTGTTGGC TGCGCGGGCT TCCAAAGCAC ACAATGAACT GTATAAAGAA
    CCGATTGATG CAGCCATTCT AGGCCTTATG GATGATCCAG AACAGGCACG
    AGTTGGCATT AATGTTATAG AGCACCGCTC CCGTATGTTT GTTGCAATGA
    CATTGATGTA CATGACTACT TACATCGATG AAAATGGCTC CAAGTGTTCT
    GTGCTCAAAG GTGACCCTGC ATTGATGCTT CGTGACTGCA GTTGTAGCGA
    AGAAGTCAGA GAGCATATAC GCAAACGTAT TGATAAGCTC GGTCTTGATG
    GATATCAATG TATTGCTGTT GGACGTATTG TTAACTCTCG GTTGGACATC
    ATTATTCTTC TACCTTTCAT AGATGATCTC AGAAGCGATA GTGCAGAAGC
    TGTTGATAAT CTTACTGATA TGGGTCTGAG TGTAATAGTA CTTACAGAAA
    GCCCAATGAC AATTACAAAG CACGTATGTG GAAGACTTGG AAAACTGGGC
    TTAAATGTGT TACATGCTGA CTCTATGCGG GAGTTGGTAA GCAGCAAAAA
    TGAGCTTTTC TTGAATATCA ATGGGATTTC TGATCTCTTT GTAGAATATA
    ACCGTTATGT TATATCAAAT CTGAGAACTT ATTTTGGTCG TCGTAGTGCA
    ATGGTTGGAT ATGAATTTTC GGATGTTGAT TCTATCCGTG AAAGCGATAT
    TGGAATCGCA GTTGCCGATG CCACTGATAG CACCAAAAGT GAATCTGATA
    TTGTTTTGAC TGAGCATGCC TTGCTGTCTG TTTCTTCTGC TGTTCAAGCC
    AGTAGGGAAA TTTGTCAGAT CATGAAAGGA TGCATGGTTT ATGCTGTTTC
    ATCAACTGTC CATGCTTTTG CTGTCCGTCT TATTTTACTC CTATGGAGAC
    TCGAGCTACC CTGTTTCCCG ATGCTGGTGA TTGCTGCTTG CAACTACTGC
    ACATCAACTG CAATGTTATT TGAAAGGGTG AAACCATCCC AGTCACCAGA
    TAGTTTGAAA GCAAACAAGA TTATCGCAAC TGGTGCTGCT TTTGGAAGCT
    ATATTGCCCT GAGTACAGTC GTTTTTTTCA TAATGACTAC TAGGACTGAC
    TTCATATCTC ACATAATCAA AGCTAGATTG CTTGTTGGCC ATGATGAGGA
    GATTAAATCT GCCTTATTCC TTCAAATGAG CATTGTTAAC CATGCTATTG
    GACTTTTCGC ACATTCACGC GATGGCCACT GCTCTGGGCC TATTGTTACA
    ATTTCTTCTG TTCTATCTCA ACTGGTGGCA ACCGTCATTG CTGTTTATGG
    TGACGTGAAC TCTCCTCTAC CAAAGGGCAT TGGCTGGGGC TGGGCAGGAT
    TTATCTGGCT CTACAACTTT GTCTTGCTTT TGAGCCTCAT GTTGATCTGT
    GACCTGTGTA ACCTTGCAAA GTTCAACATA TTTGGGATAA CCTGCAGGAG
    GCTGTTCACT GGTTGGACCG AGTGGATGGA GAGGTGCAGG AGGCTGCTCA
    ACAGGGGTAA AACGTGGATG GAGATGTTGA CCTTAACTGC TATCTCAGGC
    TTGATTCTTG TCTGGTCGAT ATATGCATAT CATGTCATGA AGGTCCCGCA
    GCAGTAGGGT GGCACTTGAC AGGTAGCCTT GACATTAACA TATAGCTTTA
    GGTCGCAAAT TAGTGACTAA GCAATGTAGC AATGTATATT ATTAACCCGT
    GTAAAGTAAA TGTCATCGAC ATGGTTTTGT TTCTGTCTTT TTCTTTTTTC
    TTTTCTTGGG TCCGGGCTTC TACTGCCGTA TAATTTTGAT AAGAGGGAAG
    TATATGGGTG GTCAACTTGT GCGGATGTGT CATTCGAATC TGAACTCTCA
    AAATATATTT TGGGTATCAA ACTTGTTTTG GGTGTCATGT AGGCCCAAAC
    GAGCTCTGAC CTGTTTTATG CACGGATGTG GC

    Gene models with high sequence identity

    1. AT5G57350.2 [+] show detail - H(+)-ATPase 3
      E-value: 3e-98; Score: 357.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 5.5e-17
    Gene3D no description 0.00000000000031
    superfamily Calcium ATPase, transmembrane domain M 8.9e-27
    superfamily HAD-like 1.8e-19
    superfamily Calcium ATPase, transduction domain A 0.000000000011
    HMMPfam ATPase, P-type, ATPase-associated domain 1.4e-20
    HMMPfam ATPase, P-type cation-transporter, N-terminal 0.00000000096
    HMMPanther ATPase, P-type, plasma-membrane proton-efflux 2.1e-84
    HMMPanther ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 2.1e-84
    FPrintScan ATPase, P-type, H+ transporting proton pump 0.000000000039
    FPrintScan ATPase, P-type, H+ transporting proton pump 0.000000000039
    FPrintScan ATPase, P-type, H+ transporting proton pump 0.000000000039
    FPrintScan ATPase, P-type, H+ transporting proton pump 0.000000000039
    FPrintScan ATPase, P-type, H+ transporting proton pump 0.000000000039
    FPrintScan ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 0.0000012
    FPrintScan ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 0.0000012
    FPrintScan ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 0.0000012
    FPrintScan ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 0.0000012

    See the detailed result >

    AT5G57350.2

    Model type
    Protein coding
    Short Description
    H(+)-ATPase 3
    Curator Summary
    member of Plasma membrane H+-ATPase family
    Computational Description
    H(+)-ATPase 3 (HA3); FUNCTIONS IN: ATPase activity, hydrogen-exporting ATPase activity, phosphorylative mechanism; INVOLVED IN: cation transport, metabolic process, ATP biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, plasma-membrane proton-efflux (InterPro:IPR006534), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: H(+)-ATPase 2 (TAIR:AT4G30190.1).
    Link
    InterPro Scan - TAIR