K23715

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23715

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23715

Determination of introduced cDNA(s)

  • J023100M05 - Rice Full-length cDNAs - Original: J023100M05

    full reading [+] show sequence

    Nucleotide sequence: J023100M05 - full reading 
    GCTCTACTCC TCTTCTACCT CTCCTCCTCC TCCTCTTCTT GGTCGTCTTC 
    TCCTAGCTCG CCAAGATGAG GATTTCCATG GCTCTCGCGG CGGCCGCGCT 
    GCTGCTGCTG CTGTCGCTGG CAGCGGCGGA CATGTCGATC GTGTCGTACG 
    GGGAGAGGAG CGAGGAGGAG GCGCGGCGGC TGTACGCGGA GTGGAAGGCC 
    GAGCACGGCA AGAGCTACAA CGCCGTCGGC GAGGAGGAGC GGCGGTACGC 
    GGCGTTCAGG GACAACCTCC GGTACATCGA CGAGCACAAC GCCGCCGCCG 
    CCTCCTCCTC CTCTCGCCTT CTCCCGTCTT CTCCTTCGAG TTAGCTACCT 
    CCTTATTAAC CATGGGTAAG GAGAAGACGC ACATCAACAT CGTGGTCATT 
    GGCCACGTCG ACTCCGGCAA GTCGACCACC ACGGGCCATC TGATTTACAA 
    GCTTGGAGGT ATCGACAAGC GTGTGATCGA GAGGTTCGAG AAGGAAGCCG 
    CTGAGATGAA CAAGAGGTCC TTCAAGTACG CGTGGGTGCT TGACAAGCTC 
    AAGGCCGAGC GTGAGAGAGG TATCACCATC GATATTGCCC TGTGGAAGTT 
    CGAGACCACC AAGTACTACT GCACGGTCAT CGATGCCCCT GGTCACCGTG 
    ACTTCATCAA GAACATGATC ACGGGTACCT CCCAGGCTGA CTGTGCCGTG 
    CTCATCATTG ACTCCACCAC TGGTGGTTTT GAGGCTGGTA TCTCCAAGGA 
    TGGCCAGACC CGTGAGCACG CTCTTCTTGC TTTCACTCTT GGAGTGAAGC 
    AGATGATCTG CTGCTGCAAC AAGATGGATG CCACCACTCC CAAGTACTCC 
    AAGGCCCGTT ATGATGAAAT CGTGAAGGAA GTCTCATCCT ACCTGAAGAA 
    GGTCGGCTAC AATCCTGACA AGATTCCCTT CGTTCCCATC TCTGGGTTTG 
    AGGGTGACAA CATGATTGAG AGGTCCACCA ACCTTGACTG GTACAAGGGC 
    CCCACCTTGC TTGAGGCTCT TGACCAGATC AACGAGCCCA AGAGGCCATC 
    AGACAAGCCC CTGCGTCTTC CCCTTCAGGA CGTGTACAAG ATCGGTGGTA 
    TTGGCACCGT GCCTGTGGGT CGTGTTGAGA CTGGAGTCCT CAAGCCTGGT 
    ATGGTGGTGA CCTTTGGTCC CAGTGGCCTG ACCACTGAGG TCAAGTCGGT 
    TGAGATGCAC CACGAGGCTC TCCAGGAGGC TCTTCCTGGT GACAACGTCG 
    GGTTCAACGT GAAGAACGTT GCGGTGAAGG ATCTGAAGCG TGGGTACGTG 
    GCCTCCAACT CCAAGGATGA CCCTGCCAAG GAGGCTGCCA GCTTCACCTC 
    CCAGGTGATC ATCATGAACC ACCCTGGGCA GATCGGTAAC GGCTATGCTC 
    CAGTGCTGGA CTGCCACACC TCCCACATTG CTGTCAAGTT TGCTGAGCTG 
    GTGACCAAGA TTGACAGACG ATCTGGCAAG GAGCTGGAGA AGGAGCCCAA 
    GTTCTTGAAG AACGGTGATG CTGGTATGGT CAAGATGATT CCTACCAAGC 
    CCATGGTTGT GGAGACCTTC TCTGAGTACC CTCCTCTTGG TCGTTTTGCG 
    GTGCGTGACA TGAGGCAAAC GGTGGCTGTT GGCGTCATCA AGAACGTGGA 
    GAAGAAGGAC CCAACCGGTG CCAAGGTGAC CAAGGCTGCC GCCAAGAAGA 
    AGTGAGCCTC GTTCAAATGG TGGTTTGCAT GTCTGCAGTT GAGATATCTA 
    GTTCTAGTAT TTGTTAAGTT TTGCCCACGG CCATGGCTCT CGTTTCATGG 
    ACCGTTAATA TCTGCTCGCA ATGTGCACTA TGTCAGTCGT TTAATACTCG 
    TTTATTTCTG TTCGGTT

    Gene models with high sequence identity

    1. AT5G60390.3 [+] show detail - GTP binding Elongation factor Tu family protein
      E-value: 0; Score: 856.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Proteinase inhibitor I29, cathepsin propeptide 1.7e-07
    FPrintScan Protein synthesis factor, GTP-binding 3.9e-23
    FPrintScan Protein synthesis factor, GTP-binding 3.9e-23
    FPrintScan Protein synthesis factor, GTP-binding 3.9e-23
    FPrintScan Protein synthesis factor, GTP-binding 3.9e-23
    FPrintScan Protein synthesis factor, GTP-binding 3.9e-23
    HMMPanther ELONGATION FACTOR 1-ALPHA (EF-1-ALPHA) 0
    HMMPanther TRANSLATION FACTOR 0
    HMMPanther CYSTEINE PROTEASE 4.1e-19
    HMMPanther Peptidase C1A, papain 4.1e-19
    PatternScan Protein synthesis factor, GTP-binding 0
    HMMTigr Translation elongation factor EF1A, eukaryotic/archaeal 2.1e-293
    HMMPfam Protein synthesis factor, GTP-binding 9.7e-56
    HMMPfam Translation elongation factor EFTu/EF1A, C-terminal 9.9e-33
    HMMPfam Translation elongation factor EFTu/EF1A, domain 2 3.4e-17
    HMMPfam Proteinase inhibitor I29, cathepsin propeptide 7.3e-10
    BlastProDom Q46515_DESMO_Q46515; 6e-07
    Gene3D no description 3.2e-58
    Gene3D no description 3.6e-31
    Gene3D no description 1.2e-45
    Gene3D no description 2.4e-06
    superfamily P-loop containing nucleoside triphosphate hyd 5.6e-84
    superfamily Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal 2.5e-41
    superfamily Translation elongation/initiation factor/Ribosomal, beta-barrel 4.6e-33
    superfamily Cysteine proteinases 8.5e-09

    See the detailed result >

    AT5G60390.3

    Model type
    Protein coding
    Short Description
    GTP binding Elongation factor Tu family protein
    Computational Description
    GTP binding Elongation factor Tu family protein; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion, nucleus, cytoplasm; EXPRESSED IN: cotyledon, male gametophyte, guard cell, pollen tube, seed; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seed development stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000), Translation elongation factor EF1A, eukaryotic/archaeal (InterPro:IPR004539); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT1G07940.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR