K23731

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23731

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23731

Determination of introduced cDNA(s)

J023127J10 - Rice Full-length cDNAs - Original: J023127J10

full reading [+] show sequence

CTTCCCTTTC TCCTCCTCTC TCCTCTTCCC CTCTCCAAGT CTCCCGGTCT 
CCTTCCTCCT CTCTTCCCGG CCGCCTCGCC TCGCCTCCGC CTTCCCGATC 
GCAATTCGCC TCCTCCTCCT CCCACCCATG GCGCGGCGAT CCGCCCCCCT 
CCTCCGCCGC ATCCTCTCCT CCCCGGCCCC CGCCCCGGCG CACCATGGCG 
GCGCCGGCGC GCGCCGCACG GTGACCTACA TGCCCAGGCC AGGGGACGGG 
AACCCGCGCG CCGTGACGCT GATCCCGGGG GACGGGATCG GGCCGCTCGT 
GACGGGGGCC GTGCAGCAGG TGATGGAGGT GATGCACGCG CCGGTCTACT 
TCGAGACCTA CGAGGTCCGC GGCGACATGC CCACCGTGCC GCCCGCCGTC 
ATCGAGTCCA TCCGCCGCAA CAAGGTGTGC CTCAAGGGCG GCCTCGCCAC 
CCCCGTCGGC GGCGGGGTCT CCTCCCTCAA CATGCAGCTC CGCAAGGAGC 
TCGACCTCTA CGCCTCGCTC GTCAACTGCT CCAACTTCCC CGGCCTCCCC 
ACCAGGCACC AGGACGTCGA CATCGTCGTC ATCAGGGAGA ACACCGAGGG 
GGAGTACTCG GGGCTCGAGC ACGAGGTCGT GCCCGGCGTC GTCGAGAGCC 
TCAAGGTGAT AACAAAGTTT TGCTCTGAGA GGATTGCCAA ATATGCTTTT 
GAGTATGCTT ACCTTAACAA CCGAAAGAAA GTCACAGCAG TGCATAAAGC 
AAACATCATG AAGCTTGCTG ATGGTTTGTT CTTGGAATCT TGCCGTGAGG 
TTGCCTCAAA GTATCCTGGT ATTCAGTATA ATGAGATCAT TGTCGACAAC 
TGCTGTATGC AACTTGTTGC AAAGCCTGAG CAATTTGATG TCATGGTTAC 
ACCAAACCTT TATGGCAATT TGGTTGCTAA CACGGCTGCA GGTATTGCTG 
GAGGGACAGG TGTTATGCCT GGAGGTAATG TGGGTCAGGA CCATGCTGTC 
TTTGAGCAAG GTGCTTCTGC AGGAAACGTC GGAAACGAGA ACATCTTAGA 
GCAGAAGAAA GCAAACCCTA TTGCGCTGCT TCTATCATCC GCCATGATGT 
TGAGGCATTT GCAGTTCCCG TCATTCGCCG ACCGGCTGGA GACGGCGGTG 
AAGCGTGTCA TTGCGGAAGG CAAGTACAGA ACAAAGGATC TAGGCGGCAC 
CAGCACCACC CAGGAAGTCA CTGATGCAGT AATCGCCAAT CTGGATTAGA 
TACCAGCCGG TGCACGCCTG AGAGATTAAT TCTTTTGGGG GACTAGCTCA 
TTTGTCCCGA CTCCCGATTA TTTTTGTTTC GTATAGAGTT TAGATCGTCA 
ATTTGTACGA CGCTTCCCAG GAAGGAATCG TGAGGCAATA TCTGTTTCTT 
AGTTCTGTTC CACAAATAAT TCAGGAACCC ACGAGGAGTA TTCTTCACAC 
GATGCTGTGT AACAAGGTAA AGAGAACACC TTTTGTTGCA AAGGGAAATG 
CTGGCAGCCT TAATTCCTTT AACTGAAATG ATTATGAGAG TTGATTATCG 
GTCCTCAGCC GCGGCTGTGT CTCCATGGAC CTCAAGACCG TTGTTTCC

Gene models with high sequence identity

AT4G35260.1 [+] show detail - isocitrate dehydrogenase 1
E-value: 5e-162; Score: 568.00

InterPro Scan Digest

Program	Description	E-value
HMMTigr	Isocitrate dehydrogenase NAD-dependent, mitochondrial	2.4e-247
superfamily	Isocitrate/Isopropylmalate dehydrogenase-like	5.5e-111
HMMPfam	Isocitrate/isopropylmalate dehydrogenase	2e-78
HMMPanther	ISOCITRATE DEHYDROGENASE [NAD]	6e-190
HMMPanther	Isocitrate/isopropylmalate dehydrogenase	6e-190
Gene3D	Isocitrate/isopropylmalate dehydrogenase	3.9e-111

See the detailed result >

AT4G35260.1

Model type: Protein coding
Short Description: isocitrate dehydrogenase 1
Curator Summary: Encodes a regulatory subunit of the mitochondrially-localized NAD+- dependent isocitrate dehydrogenase.
Computational Description: isocitrate dehydrogenase 1 (IDH1); CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate dehydrogenase NAD-dependent, mitochondrial (InterPro:IPR004434); BEST Arabidopsis thaliana protein match is: isocitrate dehydrogenase subunit 2 (TAIR:AT2G17130.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR