K23741

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23741

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23741

Determination of introduced cDNA(s)

  • J033044C15 - Rice Full-length cDNAs - Original: J033044C15

    full reading [+] show sequence

    Nucleotide sequence: J033044C15 - full reading 
    GGCTTGGCCT TGTCGCACTC CGGCTTCTCC AGGAAGAAGA CGTGCCCCTC 
    CCCCTCCGAC TCCACCCACG TCGCCGTCCC GCGCCAGGGG CTCGCCGCCA 
    CGGCGTCGTA GTACGCGCGG TCCCTCGCCG CCAGCCCGTC GGTCTGCCCC 
    GCCGCCACCA GCATCCTCTC GCACGCGAGC TTCTCCAGCG CCGGCGCGCC 
    AGGCGCAAGC GGGTTCATCC TCGGGTCGTC CGCGCCGCCG GACGCGCCGG 
    GGCACGCGTA GCACCATATC ATACCGGTGA GCGCGGCCGC GGCCGGGGGC 
    TCCCCCTCGA GAACCGTGCT CCCGCCGAAC CACGGGTGCA GCAGTAACGC 
    GCCCTCGATC CTCGGCCCGC CGTTGGAGGC CGCCCTCAGG AGCATGTCGT 
    GCACGATGTT GCCGCCGGCG CTGTCGCCGG CGATGAACAG TCGGGACACG 
    TCGCCGTGCT CCGCGAGCCA GCCATCTTGC GCTGACGCCG CCCACAGTAG 
    CCCGGCCCAG GAATCGTCGT AGGCCGCCGG CAGCGGGTGC TCCGGGGCGA 
    GGCGGTAGTC GACGGACACC ACGACGACGC CGGCCGCGGC GGCGAAGGGG 
    TTGACGTAGT TGTGGTACGT GGAGGAGTCG GCCGACTCGA TGAGGAAGCC 
    GCCTCCGTGG AAGAAGACGA GGACGGGGAG CTTCTTGGAT GGCTCTTGGA 
    TCTTGGGGAG GTAGAGGCGC ACGGAGAGGC CGGTGCCGGC GTCGATGACG 
    ACGTCCTTGG AGGCGACGCC GGTGGCCTCG TCGACGCCAG CGGGCAGGCA 
    GGGTGGTCGG TGAAGGCGGT CCATCTTGCC GCTCTTGTAG ATGCGGAAGT 
    GCGCCGGAGC CTCGAACACC ACGGCGTCGG GCTCGGTCTC GGAGGCCATG 
    GCGAATTGGT GGATGCTGCC GCAGAAGGCG TTTTGGCCTC CGGCGGGCTC 
    GATGGCGAAT GGAGAGATGA TAAGGTACGT CTTGAATCAG CTAATAAACC 
    CCTGGCTGGG ACCTGGGAGG GAGAGCGTCT GCCGCACGTC CTTTTTCGTC 
    CTTGGATCTT GTCTTTGATT TTTTTAGAAA AAAATCAAAT GAAGTTTATT 
    TAGAACCG

    Gene models with high sequence identity

    1. AT3G48690.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
      E-value: 2e-57; Score: 219.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Abhydrolase_3 2.8e-43
    HMMPanther CARBOXYLESTERASE-RELATED 1.8e-75
    HMMPanther MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES 1.8e-75
    superfamily alpha/beta-Hydrolases 5.6e-50
    Gene3D no description 2e-58
    PatternScan Lipase, GDXG, active site 0

    See the detailed result >

    AT3G48690.1

    Model type
    Protein coding
    Short Description
    alpha/beta-Hydrolases superfamily protein
    Curator Summary
    Encodes a protein with carboxylesterase whose activity was tested using both pNA and 2,4-D-methyl.
    Computational Description
    CXE12; FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: response to salt stress; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDXG, active site (InterPro:IPR002168), Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: carboxyesterase 13 (TAIR:AT3G48700.1); Has 9324 Blast hits to 9298 proteins in 1467 species: Archae - 108; Bacteria - 5259; Metazoa - 789; Fungi - 845; Plants - 1410; Viruses - 3; Other Eukaryotes - 910 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR